Job Description P0AG82 Confidence 97.99% Date Thu Jan 5 11:28:24 GMT 2012 Rank 27 Aligned Residues 244 % Identity 17% Template c3pu5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis Resolution 2.05 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	F	A	E	A	S	L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	.	.	.	.	A	N	T	V	D	F	G	A	S	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	D	H	I	Y	V	T	S	S	G	G	S	F	L	E	N	V	R	K	H	X	A	E	P	F	E	K	Q	S	G	V	K	V	T	L	V	P	G	T	N	P	A	H	A	L	K	I	L	S	S	R	G	T	P	P	Y	D	V	A	A	F	G	G	N	D	X	Y	R	L	I	R	A	K	K	L	A	Q	V	D
Template Known Secondary structure		T	T																				T																															S	S		S		S															T	T		B
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
										83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	P	L	S	D	E	K	L	A	Q	E	G	L	F	Q	F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																													.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	S	V	P	S	L	A	D	V	P	E	K	F	K	A	D	W	E	G	C	G	S	L	Y	D	Y	S	S	V	G	I	A	Y	R	P	.	.	D	K	I	Q	G	G	V	K	S	W	K	E	F	V	E	R	T	V	A	G	E	F	G	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T		G	G	G	G	G	S		G	G	G	T	G	G	G	T	T	S						B									T	.	.	T	T	S	T	T			S	S											T	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	E	.	.	.	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	N	N	L	A	Y
Query Conservation																												.	.	.
Alig confidence																												.	.	.
Template Conservation
Template Sequence		V	F	F	N	N	L	S	S	N	V	R	G	A	E	V	L	S	X	F	G	K	I	Y	G	S	G	Y	G	D	I	E	A	S	I	A	T	L	E	R	X	K	P	H	I	F	K	F	F	T	A	F	N	D	P	V	V	L	L	T	S	G	E	G	A	I	G	P	G	W	D	G	R	T	F	I	A	E	D	S	T
Template Known Secondary structure							G	G	G	T	S	S													S	S	S	T	T													G	G	G							S	T	T									T	S		S																T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A
Query Conservation																																																																														.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	X	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	V	D	P	T	E	G	A	V	S	S	G	P	V	X	A	V	V	K	G	G	K	E	D	L	A	K	A	F	X	N	Y	A	L	G	E	E	A	Q
Template Known Secondary structure		T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T												B	T	T	S													T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.																																					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		311	.	.	.	.	.		.	.	.	320	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		K	Q	A	N	D	L	.	D	Y	A	S	L
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		K	A	F	C	E	A	X	Y	Y	G	A	V
Template Known Secondary structure									T		B		S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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