Job Description P0AG82 Confidence 98.84% Date Thu Jan 5 11:28:24 GMT 2012 Rank 15 Aligned Residues 258 % Identity 14% Template c3k6wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans Resolution 2.45 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.
Predicted Secondary structure																								.																										.	.																								.	.
Query SS confidence																								.																										.	.																								.	.
Query Sequence		A	S	L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	.	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	A	N	.	.	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	E	G	L	F	Q	.	.	F	P	T	V	I
Query Conservation																								.																										.	.																								.	.
Alig confidence																								.																										.	.																								.	.
Template Conservation
Template Sequence		E	V	L	T	V	F	H	A	G	S	L	S	V	P	F	E	E	L	E	A	E	F	E	A	Q	H	P	G	V	D	V	Q	R	E	A	A	G	S	A	Q	S	V	R	K	I	T	E	L	G	K	K	A	D	V	L	A	S	A	D	Y	A	L	I	P	S	L	M	V	P	E	Y	A	D	W	Y	A	A	F	A	R
Template Known Secondary structure										G	G	G																T	T																			T	S					S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	.	.
Query Conservation																																																																																.	.
Alig confidence											.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation											.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	Q	M	I	L	A	Y	T	N	.	.	E	S	K	Y	G	D	E	I	N	T	D	N	W	Y	E	I	L	R	R	P	D	V	R	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	N	P	N	D	D	P	A	G	Y	R	S	Q	M	V	T	Q	L	A	E	S	Y	Y
Template Known Secondary structure										T	.	.	T	S	T	T	T	T	S			T	T	T							S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T																		T
Template Predicted Secondary structure											.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
																												180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	N	N	L	A	Y	T	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	D	D	M	I	Y	D	D	L	M	L	A	N	T	G	M	T	L	T	T	E	E	N	G	T	A	L	I	H	V	P	A	S	E	E	I	S	P	N	T	S	K	I	M	L	R	S	M	E	V	E	L	S	S	A	L	E	T	G	E	I	D	Y	L	Y	I	Y	R	S	V	A	E	Q	H	G	F	E	Y	V	A
Template Known Secondary structure		T		T	T						T	T	T	T	S	S							T	T	S									G	G	G	S				T	T	T					S	S	G	G	G	S						T	T	S		S													T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A	K	Q
Query Conservation																																																																												.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.																				.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		L	P	P	A	I	D	L	S	S	L	E	Y	A	D	N	Y	S	K	.	.	.	.	.	.	.	.	.	.	V	Q	V	E	M	V	N	G	E	V	V	T	G	S	P	I	V	Y	G	V	T	I	.	.	.	.	.	P	N	N	A	E	N	S	E	L	A	T	E	F	V	A	L	L	L	G	E	T	G	Q	Q	I
Template Known Secondary structure				T	T	T	S	S			G	G	G					T	T	.	.	.	.	.	.	.	.	.	.						T	T	S															.	.	.	.	.		T	T		S	S													S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.											.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.						.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		313	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	D	L	D	Y	A	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	E	N	G	Q	P	P	I
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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