Job Description P0AG82 Confidence 31.75% Date Thu Jan 5 11:28:24 GMT 2012 Rank 99 Aligned Residues 120 % Identity 8% Template c3ix1A_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		25	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.																														.
Query SS confidence										.	.	.	.																														.
Query Sequence		A	E	A	S	L	T	G	A	.	.	.	.	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	.	G	S	S	G	G	V	K	Q	I	I	A	N	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	E	G	L	F	Q	F	P	T
Query Conservation										.	.	.	.																														.
Alig confidence										.	.	.	.																														.
Template Conservation
Template Sequence		A	L	E	T	V	E	V	M	L	D	W	Y	P	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K	D	L	P	V	V	S	V	A
Template Known Secondary structure											S	S	S			G	G	G									T	T					T	T									S	S	T	T									T	S		S															T	T
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		V	I	.	.	.	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K
Query Conservation				.	.	.
Alig confidence				.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.									.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.									.	.	.
Template Sequence		S	V	V	R	S	P	L	N	H	V	M	F	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	D	F	D	S	P	A	D	.	.	.	.	.	.	.	.	.	.	.	L	V	G	L	T	V	G	Y	.	.	.	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A
Template Known Secondary structure						S									G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			S	S	G	G	G	.	.	.	.	.	.	.	.	.	.	.	G	T	T	S					.	.	.		S		T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.									.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.																				.	.	.	.	.	.	.	130	.												.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		177
Predicted Secondary structure
Query SS confidence
Query Sequence		V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		156

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions