Return to main results Retrieve Phyre Job Id

Job DescriptionP0AG82
Confidence97.94%DateThu Jan 5 11:28:24 GMT 2012
Rank28Aligned Residues260
% Identity12%Templatec3cfzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40........ .50.........60.........70... ......80.........90...... ...100
Predicted Secondary structure 



.







..













..
Query SS confidence 






















.
























. .






















. .



Query Sequence  EASLTGAGATFPAPVYAKWADTY. QKETGNKVNYQGIGSSGGVKQIIAN. . TVDFGASDAPLSDEKLAQEGLFQ. . FPTV
Query Conservation     
   


   
         .       
     


 

     
..  


 


 
   
        ..  

Alig confidence 






















.
























..






















..



Template Conservation 
 



   
         
  

   
 
 
               
 
  


               
 
       
Template Sequence  KIVLKIFHAGSLSVPFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFA
Template Known Secondary structure 
GGG
TT
TS



SSSTTTTTTT
S

Template Predicted Secondary structure 


























Template SS confidence 















































































   37..40.........50.........60.........70.........80.........90.........100.........110......
 
   101........110.........120.........130.........140.........150.........160.........170.........
Predicted Secondary structure 













































.
Query SS confidence 














































































.
Query Sequence  IGGVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRRADGSGTSFVFTSYLAKVNE.
Query Conservation     
 
 
           

  

  

 
 

 
 
      
     
   
 
  
   


   
   
     .
Alig confidence 









..



















...................



























.
Template Conservation            ..                    ...................                             
Template Sequence  RNEIVLAYTD. . KSKYKDEINSTNWYKILQRP. . . . . . . . . . . . . . . . . . . DVKIGFSNPNDDPCGYRTQMVLQLAELYY
Template Known Secondary structure 


T..TSTTTTT

TTTTTST...................T


TTT
Template Predicted Secondary structure 









..













...................













Template SS confidence 















































































   117..120...... ...130.........140...... ...150.........160.........170.....
 
   180.........190.........200.........210.........220.........230......
Predicted Secondary structure  .......................


























Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . .
























































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . EWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGYVEYAYAKQNNLAYTKLIS
Query Conservation  .......................                         
   
    




               
  
Alig confidence  .......................






















































..
Template Conservation                                                                                ..
Template Sequence  KDPTIYDNLVLKHSNIKVEENNGTYLILVPKELDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYKSVANQHHLKYIEL. .
Template Known Secondary structure  T
TTTGGGBS
TT
SS

B
TTTSSGGGGTTSSSTT


..
Template Predicted Secondary structure 














































..
Template SS confidence 















































































   176...180.........190.........200.........210.........220.........230.........240.........250...
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  ADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWPITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDL
Query Conservation    
  
 

   
  
                    
 


    
               
  

   




      
Alig confidence  .













........



































...









.






Template Conservation  .              ........                         
   
 
 
 
...  

 

 
 .
 

   
Template Sequence  . PKEINLGYYEYADT. . . . . . . . YKKVALKIIAKNKTINAKPIVYGMTVPTNAPHKKEA. . . IEFVKFVLGH. PEVLENN
Template Known Secondary structure  .
TTTSS

GGG........TTGGGT





TT
TT...
.TTT
Template Predicted Secondary structure  .



........





















...


.
Template SS confidence 















































































   254.....260....... ..270.........280.........290.........300... ......310... ......320
 
   317..320.
Predicted Secondary structure 




Query SS confidence 




Query Sequence  DYASL
Query Conservation 




Alig confidence 




Template Conservation 
  

Template Sequence  GQPAI
Template Known Secondary structure  T

B
Template Predicted Secondary structure 




Template SS confidence 




   321....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions