Job Description P0AG82 Confidence 97.05% Date Thu Jan 5 11:28:24 GMT 2012 Rank 32 Aligned Residues 276 % Identity 15% Template c2xd3A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose. Resolution 2.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	.	.	.	.	.	A	N	T	V	D	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	V	Y	V	D	E	G	Y	K	S	Y	I	E	E	V	A	K	A	Y	E	K	E	A	G	V	K	V	T	L	K	T	G	D	A	L	G	G	L	D	K	L	S	L	D	N	Q	N	G	N	V	P	D	V	M	M	A	P	Y	D	R	V	G	S	L	G	S	D	G	Q	L	S	E	V	K	L	S	D	G	A
Template Known Secondary structure								G	G	G															S	S																T								S				S															T	T		B							G	G	G
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
																92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	F	Q	F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	D	D	T	T	K	S	L	V	T	A	A	N	G	K	V	Y	G	A	P	A	V	I	E	S	L	V	M	Y	Y	N	K	.	.	D	L	V	K	D	A	P	K	T	F	A	D	L	E	N	L	A	K	D	S	K	Y	A	F	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	G	K	T	T
Template Known Secondary structure												B		T	T			B																T	.	.	T	T		S	S				B										S	G	G	G	B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T		B
Template Predicted Secondary structure																																			.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.														.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N	E	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	Y	A	K	Q	N	N	L	A	Y	T	K	L	I	S	A
Query Conservation
Alig confidence																																																																								.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence		A	F	L	A	D	W	T	N	F	Y	Y	T	Y	G	L	L	A	G	N	G	A	Y	V	F	G	Q	N	G	K	D	A	K	D	I	G	L	A	N	D	G	S	I	V	G	I	N	Y	A	K	S	W	Y	E	K	W	P	K	G	M	Q	D	T	E	G	A	G	N	L	I	Q	.	.	.	.	.	T	Q	F	Q	E
Template Known Secondary structure		S					T	T	S											T	T									T							T	T	S															T	T	S		G	G	G	G		S	S								.	.	.	.	.					T
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.		.	.	.	.
Predicted Secondary structure																																																																								.					.
Query SS confidence																																																																								.					.
Query Sequence		D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A	K	.	Q	A	N	D
Query Conservation																																																																								.					.
Alig confidence																																																												.	.	.										.					.
Template Conservation																																																												.	.	.
Template Sequence		G	K	T	A	A	I	I	D	G	P	W	K	A	Q	A	F	K	D	A	K	V	N	Y	G	V	A	T	I	P	T	L	P	N	G	K	E	Y	A	A	F	G	G	G	K	A	W	V	I	P	Q	A	V	K	N	L	E	A	S	.	.	.	Q	K	F	V	D	F	L	V	A	T	E	Q	Q	K	V	L	Y	D	K
Template Known Secondary structure		T			S						G	G	G							T	T										B		T	T	S															B	T	T		S						.	.	.									S
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	Y	A	S	L	P	D	S	V	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	E	I	P	A	N	T	E	A	R	S
Template Known Secondary structure							S	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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