Job Description P0AG82 Confidence 60.29% Date Thu Jan 5 11:28:24 GMT 2012 Rank 74 Aligned Residues 248 % Identity 13% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	G	V	K	Q	I	I	A	N	T	V	D	.	.	.	.	.	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	E	G	L	F	Q	F	P	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	S	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R	N	L	P	F	D	P	K	K	D	F	A	A	V	I	N
Template Known Secondary structure		T	S															T	T	S	S	S										G	G	G									T	S		S	S	S	S							T										S	S		S	S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K	V	N
Query Conservation
Alig confidence																			.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	Y	K	.	.	.	.	.	T	L	G	E	L	M	A	A	A	K	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	V	S	A	K
Template Known Secondary structure													T	T		S			.	.	.	.	.	S								T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								S	S	T	T	S														T
Template Predicted Secondary structure																			.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.																				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		E	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	.	.	.	.	Y	A	K	Q	N	N	L	A	Y	T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A	A	K
Query Conservation																																														.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.																														.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template Sequence		T	H	M	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	.	.	.
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.				S	S										T	T	S	S	S															T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template SS confidence
		155	.	.	.	.														160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																																.															.	.	.
Query SS confidence																								.	.	.																																.															.	.	.
Query Sequence		G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	.	.	.	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	.	T	G	A	K	Q	A	N	D	L	D	Y	A	S	L	.	.	.	P	D	S	V	V	E
Query Conservation																								.	.	.																																.															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.																																.															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	V	A	G	Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	R	D	D	V	Q	K	K	L	A	D	L	G	Y	S	T	A	S	D	G	P	E	V	F	Q	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T		T	T													T	T	S																													T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		328	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	R	A	A	W	K	T	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	E	T	D	I	D	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions