Job Description P0AG82 Confidence 49.12% Date Thu Jan 5 11:28:24 GMT 2012 Rank 87 Aligned Residues 246 % Identity 14% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.														.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																					.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	G	A	T	F	P	A	P	V	Y	A	K	W	A	D	T	Y	Q	K	E	T	G	N	K	V	N	Y	Q	G	I	G	S	S	G	.	G	V	K	Q	I	I	A	N	T	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	A	S	D	A	P	L	S	D	E	K	L	A	Q	E	G	L	F	Q
Query Conservation																																					.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.													.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		G	G	P	T	D	N	V	A	R	S	L	A	E	S	X	R	P	T	L	G	E	T	.	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K	N	P	G	Y	E	P	Y	T	S	F	E	P	I	G
Template Known Secondary structure		T	S																		S	S		.									G	G	G									T	S		S	S	S	S							T					G	G	G	T		S			S	S		T	T	T	S
Template Predicted Secondary structure																								.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	T	V	I	G	G	V	V	L	A	V	N	I	P	G	L	K	S	G	E	L	V	L	D	G	K	T	L	G	D	I	Y	L	G	K	I	K	K	W	D	D	E	A	I	A	K	L	N	P	G	L	K	L	P	S	Q	N	I	A	V	V	R	R	A	D	G	S	G	T	S	F	V	F	T	S	Y	L	A	K
Query Conservation
Alig confidence			.																		.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.																		.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	V	V	D	V	P	X	T	I	I	A	R	G	D	F	P	P	N	.	.	.	.	.	N	I	K	E	L	A	E	Y	V	K	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A
Template Known Secondary structure			.												T	T		S			.	.	.	.	.	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G						S		T	T	S
Template Predicted Secondary structure			.																		.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.																				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		V	N	E	E	W	K	N	N	V	G	T	G	S	T	V	K	W	P	I	G	L	G	G	K	G	N	D	G	I	A	A	F	V	Q	R	L	P	G	A	I	G	Y	V	E	Y	A	.	.	.	.	Y	A	K	Q	N	N	L	A	Y	T	K	L	I	S	A	D	G	K	P	V	S	P	T	E	E	N	F	A	N	A
Query Conservation																																																.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.																														.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.
Template Sequence		L	G	V	N	L	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	Y	K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	.
Template Known Secondary structure			T						.	.	.	.	.	.	.	.	.	.	.	.	.				S	S										T	T	S	S																	T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.
Template SS confidence
		150	.	.	.	.	.	.														.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.						.
Predicted Secondary structure																										.	.	.																																		.														.	.	.	.	.
Query SS confidence																										.	.	.																																		.														.	.	.	.	.
Query Sequence		A	K	G	A	D	W	S	K	T	F	A	Q	D	L	T	N	Q	K	G	E	D	A	W	P	.	.	.	I	T	S	T	T	F	I	L	I	H	K	D	Q	K	K	P	E	Q	G	T	E	V	L	K	F	F	D	W	A	Y	K	T	G	.	A	K	Q	A	N	D	L	D	Y	A	S	L	P	.	.	.	.	.	D
Query Conservation																										.	.	.																																		.														.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.																																		.														.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	Y	K	G	F	E	V	G	I	W	H	G	X	W	A	P	K	G	T	P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q	L	G	A	E	V	L	T	N	E	A	N	P	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		T	T													T	T																													T	T					G	G	G		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	V	E	Q	V	R	A	A	W	K	T	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	Q	A	K	V	K	Q	Q	V	P	Q	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions