Job Description P33015 Confidence 1.49% Date Thu Jan 5 11:50:53 GMT 2012 Rank 51 Aligned Residues 209 % Identity 15% Template c2b5fD_ PDB info PDB header:transport protein,membrane protein Chain: D: PDB Molecule:aquaporin; PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution Resolution 3.90 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.											.	.	.	.	.	.	.	.	100
Predicted Secondary structure																		.																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		D	M	Y	I	V	K	N	N	R	M	F	Y	A	L	L	I	.	A	I	S	V	Q	S	V	G	V	F	A	L	I	Q	A	G	L	L	T	Y	E	A	G	A	F	P	W	L	G	T	V	I	G	G	Y	I	F	G	L	G	I	V	L	A	.	.	.	.	.	.	.	.	.	.	G	G	C	A	T	G	T	W	Y
Query Conservation																		.																																													.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	G	E	L	K	L	W	S	F	W	R	A	A	I	A	E	F	I	A	T	L	L	F	L	Y	I	T	V	A	T	V	I	G	H	S	K	E	T	V	V	C	G	S	V	G	L	L	G	I	A	W	A	F	G	G	M	I	F	V	L	V	Y	C	T	A	G	I	S	G	G	H	I	N	P	A	V	T	F	G
Template Known Secondary structure								S	G	G	G	T	T																									T		S	S	T	T		S																						T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		101	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		R	A	G	E	G	L	.	.	.	I	G	S	W	I	A	L	F	T	Y	M	V	M	S	A	V	M	R	S	P	H	A	S	G	L	N	Q	T	L	Q	H	Y	S	T	E	H	N	S	I	A	E	T	F	N	L	S	V	W	P	L	V	A	V	L	L	V	I	T	L	W	V	V	M	K	E	L	K	K	P	K	L
Query Conservation								.	.	.
Alig confidence								.	.	.
Template Conservation
Template Sequence		L	F	L	A	R	K	V	S	L	L	R	A	L	V	Y	M	I	A	Q	C	L	G	A	I	C	G	V	G	L	V	K	A	F	M	K	G	P	Y	N	Q	F	G	G	G	A	N	S	V	A	L	G	Y	N	K	G	T	A	L	G	A	E	I	I	G	T	F	V	L	V	Y	T	V	F	S	A	T	D	P	K	H
Template Known Secondary structure				T	T	T	S	S																											S							S	G	G	G						T	T	S																							T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		K	V	A	T	L	P	P	R	R	T	G	I	A	H	I	L	F	E	K	R	W	H	P	F	V	T	A	V	L	I	G	L	I	A	L	L	A	W	P	L	S	E	A	.	.	.	T	G	R	M	F	G	L	G	I	T	S	P	T	A	N	I	L	Q	F	L	V	A	G	D	M	K	Y	I	N	W	G	V	F	L
Query Conservation																																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	I	L	A	P	L	P	I	G	F	A	V	F	M	V	H	L	A	T	I	P	I	T	G	T	G	I	N	P	A	R	S	F	G	A	A	V	I	F	N	S	N	K	V	.	.	.	.	.	.	.	.	.	.	.	W	D	D	Q	W	I	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S															T	T	T	T	S																					.	.	.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.												.	240	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	I	F	V	G	S	F	I	A	A	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	V	G	P	F	I	G	A	A	V	A	A	A	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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