Return to main results Retrieve Phyre Job Id

Job DescriptionP0AA16
Confidence50.55%DateThu Jan 5 11:11:45 GMT 2012
Rank293Aligned Residues92
% Identity15%Templatec3n0wA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10... ......20.........30..... ....40.........50.........60.........70....
Predicted Secondary structure 


....



.......















Query SS confidence 







. . . .





















. . . . . . .






































Query Sequence  KILVVDDD. . . . MRLRALLERYLTEQGFQVRSVA. . . . . . . NAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQS
Query Conservation 







....      
   
   
  
  
 .......   


  
     






      
      

   
Alig confidence 







....





















.......



















..
















Template Conservation   
 

      
              
  

          
    
  
    

 
   ..                
Template Sequence  TWFLXLPDAAYGDLXNAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQAKASGAQLIVST. . SGGAANINIXKQAREFG
Template Known Secondary structure  SST

TT



T
S
..

TT
Template Predicted Secondary structure 
















..



Template SS confidence 















































































   164.....170.........180.........190.........200.........210.........220.... .....230.........240.
 
   75....80.........90.........
Predicted Secondary structure 








Query SS confidence 
























Query Sequence  NPMPIIMVTAKGEEVDRIVGLEIGA
Query Conservation      

 

              

Alig confidence 
























Template Conservation                           
Template Sequence  LPSKTQKVGGXIDILTDVKSAGLRV
Template Known Secondary structure 
S
SS


B


Template Predicted Secondary structure 










Template SS confidence 
























   242.......250.........260......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions