Job Description P0AA16 Confidence 98.19% Date Thu Jan 5 11:11:45 GMT 2012 Rank 133 Aligned Residues 189 % Identity 14% Template c2vycA_ PDB info PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli Resolution 2.4 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.									.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure															.	.	.	.	.	.	.	.																																.												.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.																																.												.	.	.	.
Query Sequence		Y	K	I	L	V	V	D	D	D	M	R	L	R	.	.	.	.	.	.	.	.	A	L	L	E	R	Y	L	T	E	Q	G	F	Q	V	R	S	V	A	N	A	E	Q	M	D	R	L	L	T	R	E	S	.	F	H	L	M	V	L	D	L	M	L	P	.	.	.	.	G	E	D	G	L	S	I	C	R	R	L	R
Query Conservation															.	.	.	.	.	.	.	.																																.												.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																																.												.	.	.	.
Template Conservation
Template Sequence		M	K	V	L	I	V	E	S	E	F	L	H	Q	D	T	W	V	G	N	A	V	E	R	L	A	D	A	L	S	Q	Q	N	V	T	V	I	K	S	T	S	F	D	D	G	F	A	I	L	S	S	N	E	A	I	D	C	L	M	F	S	Y	Q	M	E	H	P	D	E	H	Q	N	V	R	Q	L	I	G	K	L	H
Template Known Secondary structure										T	T	S	T	T	S																	T	T							S	S									T	T	T				S										S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																														.	.
Query SS confidence																			.																														.	.
Query Sequence		S	Q	S	N	P	M	P	I	I	M	V	T	A	K	G	E	E	.	V	D	R	I	V	G	L	E	I	G	A	D	D	Y	I	P	K	P	F	N	P	R	E	L	L	A	R	I	R	.	.	A	V	L	R	R	Q	A	N	E	L	P	G	A	P	S	Q	E	E	A	V	I	A	F	G	K	F	K	L	N	L	G
Query Conservation																			.																														.	.
Alig confidence																			.																														.	.
Template Conservation
Template Sequence		E	R	Q	Q	N	V	P	V	F	L	L	G	D	R	E	K	A	L	A	A	M	D	R	D	L	L	E	L	V	D	E	F	A	W	I	L	E	D	T	A	D	F	I	A	G	R	A	V	A	A	M	T	R	Y	R	Q	Q	L	L	P	P	L	F	S	A	L	M	K	Y	S	D	I	H	E	Y	S	W	A	A	P
Template Known Secondary structure				S	T	T															T		S								S					T	T	T	S																			T	S	S												T	T				S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		149	150	.	.																.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		T	R	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	E	D	E	P	M	P	L	T	S	G	.	E	F	A	V	L	K	A	L	V	S	H	P	R	E	P	L	S	R	D	K	L	M	N	L	A	R	G	R	E
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		G	H	Q	G	G	V	G	F	T	K	T	P	A	G	R	F	Y	H	D	Y	Y	G	E	N	L	F	R	T	D	M	G	I	E	R	T	S	L	G	S	L	L	D	H	T	G	A	F	G	E	S	E	K	Y	A	A	R	V	F	G	A	D
Template Known Secondary structure		T	T	T	T	T	T	G	G	G	G	S																	T						T	T	T	T			T	T	T	T																T		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions