Job Description P0AA16 Confidence 38.57% Date Thu Jan 5 11:11:45 GMT 2012 Rank 360 Aligned Residues 89 % Identity 7% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		6	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure										.	.	.																											.	.	.	.	.								.																											.	.	.	.
Query SS confidence										.	.	.																											.	.	.	.	.								.																											.	.	.	.
Query Sequence		K	I	L	V	V	D	D	D	.	.	.	M	R	L	R	A	L	L	E	R	Y	L	T	E	Q	G	F	Q	V	R	S	V	A	N	A	E	Q	.	.	.	.	.	M	D	R	L	L	T	R	.	E	S	F	H	L	M	V	L	D	L	M	L	P	G	E	D	G	L	S	I	C	R	R	L	R	S	.	.	.	.
Query Conservation										.	.	.																											.	.	.	.	.								.																											.	.	.	.
Alig confidence										.	.	.																											.	.	.	.	.								.																											.	.	.	.
Template Conservation
Template Sequence		K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I
Template Known Secondary structure									S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	N	P	M	P	I	I	M	V	T	A	K	G	E	E	V	D	R	I	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A
Template Known Secondary structure		S			S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions