Job Description P0AA16 Confidence 57.17% Date Thu Jan 5 11:11:45 GMT 2012 Rank 265 Aligned Residues 97 % Identity 19% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.
Predicted Secondary structure														.	.	.																								.	.	.	.	.	.	.																													.	.	.	.	.	.
Query SS confidence														.	.	.																								.	.	.	.	.	.	.																													.	.	.	.	.	.
Query Sequence		Q	E	N	Y	K	I	L	V	V	D	D	D	.	.	.	M	R	L	R	A	L	L	E	R	Y	L	T	E	Q	G	F	Q	V	R	S	V	A	N	.	.	.	.	.	.	.	A	E	Q	M	D	R	L	L	T	R	E	S	F	H	L	M	V	L	D	L	M	L	P	G	E	D	G	L	.	.	.	.	.	.	S
Query Conservation														.	.	.																								.	.	.	.	.	.	.																													.	.	.	.	.	.
Alig confidence														.	.	.																								.	.	.	.	.	.	.																													.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E
Template Known Secondary structure		T	T	S					B						S	S	S		S											T	T							S	S				T	T													T	T		S									S			S	S	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	R	R	L	R	S	Q	S	N	P	M	P	I	I	M	V	T	A	K	G	E	E	V	D	R	I	V	G	L	E	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H
Template Known Secondary structure												S								T	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions