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Job DescriptionP25526
Confidence100.00%DateThu Jan 5 11:41:57 GMT 2012
Rank21Aligned Residues477
% Identity31%Templatec3qanB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.... .....40.........50.........60.........70.........80
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Query Sequence  KLNDSNLFRQQALINGEWLDANNGEAIDVTNPA. NGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWF
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Template Sequence  LVEKELGKEYPLIINGERV. . TTEDKIQSWNPARKDQLVGSVSKANQDLAEKAIQSADEAFQTWRNVNPEERANILVKAA
Template Known Secondary structure  TTT
TT..

SS
SSSTT



TTS
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   28.30.........40...... ...50.........60.........70.........80.........90.........100.....
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  NLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPA
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Template Sequence  AIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQMIELNRGKEILSRPGEQNRYFYTPMGVTVTISPWNFAL
Template Known Secondary structure  T


TT
B




TT



STTTT
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   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  AMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQ
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Template Sequence  AIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVR
Template Known Secondary structure  TT


TTST

TTS



TTTT
TTS
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   186...190.........200.........210.........220.........230.........240.........250.........260.....
 
   241..... ...250.........260.........270.........280.........290.........300.........310....
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Query Sequence  LMEQCA. . . . . . KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVS
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Template Sequence  LYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAK
Template Known Secondary structure  S

TT

S







TTS
GGGG
STT


TTTT
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   266...270.........280.........290.........300.........310.........320.........330.........340.....
 
   315....320.........330.........340.........350.........360.........370.........380.........390....
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Query Sequence  KLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPL
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Template Sequence  NLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRL. MTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAF
Template Known Secondary structure  T

BS
TTSTT
SB


SSTTS.



SSS


S

TTSGGGTS


SS
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   346...350.........360.........370.........380.... .....390.........400.........410.........420....
 
   395....400.........410.........420.........430.........440....... ..450.........460... ......470.
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Query Sequence  FRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISN. . EVAPFGGIKASGLGRE. GSKYGIED
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Template Sequence  SKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLAL
Template Known Secondary structure  SST
SSS
S
S

SSS
S



TTTS
B

TTBS


BTSTTTGGG
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   425....430.........440.........450.........460.........470.........480.........490.........500....
 
   472.......480.
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Query Sequence  YLEIKYMCIG
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Template Conservation 
   
 
   
Template Sequence  HMQAKTVSEM
Template Known Secondary structure  G
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   505....510....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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