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Job DescriptionP25526
Confidence100.00%DateThu Jan 5 11:41:57 GMT 2012
Rank40Aligned Residues425
% Identity25%Templatec3lnsD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100...... ...110.........120..
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Query Sequence  KMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAK. GEISYAASFIEWFAEE
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Template Conservation    
   
  
   
  
   
       
   
      
      
      
 

    
   

      
      
Template Sequence  YLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLHEIDFALAH
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TTTT
STT


T
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   123......130...... ...140.........150.........160.........170.........180.........190.........
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Query Sequence  GKRIYGDTIPGHQA. . . DKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRA
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Template Sequence  LDEWVAPVSVPSPDIIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLIGAIIGGNTCIIKPSETTPETSAVIEKIIAEA
Template Known Secondary structure  TS



GGG
S




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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  GVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALA
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Template Sequence  FAPEYVAVIQGG. . RDENSHLLSLP. FDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMF
Template Known Secondary structure 

TTT



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TT

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   163......170.... .....180..... ....190.........200.........210.........220.........230.........
 
   280.........290.........300.........310.........320.........330.........340.........350.........
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Query Sequence  SKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGK
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Template Sequence  GKFINSGQ. TIAPDYLYVHYSVKDALLERLVERVKTEL. . . . . PEINSTGKLVTERQVQRLVSLLEAT. . . QGQVLVGSQ
Template Known Secondary structure  GGGG
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   240....... ..250.........260.........270...... ...280.........290.........300. ........310
 
   360.........370.........380.........390.........400......... 410.........420.........430........
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Query Sequence  AHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQAND. TEFGLAAYFYARDLSRVFRVGEALEYGIV
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Template Sequence  A. DVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQIQSGDA
Template Known Secondary structure  .GGGT

S

TTSGGGSS


SSS
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S
TS

S
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   312 .......320.........330.........340.........350.........360.........370.........380.........390
 
   439440...... ...450.........460.........470.........480.
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Query Sequence  GINTGIIS. . NEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIG
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Template Sequence  QVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRIV
Template Known Secondary structure  S

SGGGG
TTS
B


GGG

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   391........400.........410.........420.........430.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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