Job Description P25526 Confidence 100.00% Date Thu Jan 5 11:41:57 GMT 2012 Rank 10 Aligned Residues 479 % Identity 55% Template c2w8qA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	N	D	S	N	L	F	R	Q	Q	A	L	I	N	G	E	W	L	D	A	N	N	G	E	A	I	D	V	T	N	P	A	N	G	D	K	L	G	S	V	P	K	M	G	A	D	E	T	R	A	A	I	D	A	A	N	R	A	L	P	A	W	R	A	L	T	A	K	E	R	A	T	I	L	R	N	W	F
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		L	A	G	L	S	A	A	L	L	R	T	D	S	F	V	G	G	R	W	L	P	.	.	A	A	A	T	F	P	V	Q	D	P	A	S	G	A	A	L	G	M	V	A	D	C	G	V	R	E	A	R	A	A	V	R	A	A	Y	E	A	F	C	R	W	R	E	V	S	A	K	E	R	S	S	L	L	R	K	W	Y
Template Known Secondary structure					S		T	T	T	S			S				T	T					.	.		S								T	T	T																														T	T	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	M	M	E	H	Q	D	D	L	A	R	L	M	T	L	E	Q	G	K	P	L	A	E	A	K	G	E	I	S	Y	A	A	S	F	I	E	W	F	A	E	E	G	K	R	I	Y	G	D	T	I	P	G	H	Q	A	D	K	R	L	I	V	I	K	Q	P	I	G	V	T	A	A	I	T	P	W	N	F	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	M	I	Q	N	K	D	D	L	A	R	I	I	T	A	E	S	G	K	P	L	K	E	A	H	G	E	I	L	Y	S	A	F	F	L	E	W	F	S	E	E	A	R	R	V	Y	G	D	I	I	H	T	P	A	K	D	R	R	A	L	V	L	K	Q	P	I	G	V	A	A	V	I	T	P	W	N	F	P	S
Template Known Secondary structure							T																																					G	G	G									S		T	T																			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		A	M	I	T	R	K	A	G	P	A	L	A	A	G	C	T	M	V	L	K	P	A	S	Q	T	P	F	S	A	L	A	L	A	E	L	A	I	R	A	G	V	P	A	G	V	F	N	V	V	T	G	S	A	.	.	.	G	A	V	G	N	E	L	T	S	N	P	L	V	R	K	L	S	F	T	G	S	T	E	I
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		A	M	I	T	R	K	V	G	A	A	L	A	A	G	C	T	V	V	V	K	P	A	E	D	T	P	F	S	A	L	A	L	A	E	L	A	S	Q	A	G	I	P	S	G	V	Y	N	V	I	P	C	S	R	K	N	A	K	E	V	G	E	A	I	C	T	D	P	L	V	S	K	I	S	F	T	G	S	T	T	T
Template Known Secondary structure															T									T	T	S															T			T	T	S																			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		G	R	Q	L	M	E	Q	C	A	K	D	I	K	K	V	S	L	E	L	G	G	N	A	P	F	I	V	F	D	D	A	D	L	D	K	A	V	E	G	A	L	A	S	K	F	R	N	A	G	Q	T	C	V	C	A	N	R	L	Y	V	Q	D	G	V	Y	D	R	F	A	E	K	L	Q	Q	A	V	S	K	.	L
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		G	K	I	L	L	H	H	A	A	N	S	V	K	R	V	S	M	E	L	G	G	L	A	P	F	I	V	F	D	S	A	N	V	D	Q	A	V	A	G	A	M	A	S	K	F	R	N	T	G	Q	T	A	V	C	S	N	Q	F	L	V	Q	R	G	I	H	D	A	F	V	K	A	F	A	E	A	M	K	K	N	L
Template Known Secondary structure											T	T	T																	T	T	S															T	T	T	T		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	G	D	G	L	D	N	G	V	T	I	G	P	L	I	D	E	K	A	V	A	K	V	E	E	H	I	A	D	A	L	E	K	G	A	R	V	V	C	G	G	K	A	H	E	R	G	G	N	F	F	Q	P	T	I	L	V	D	V	P	A	N	A	K	V	S	K	E	E	T	F	G	P	L	A	P	L	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	G	N	G	F	E	E	G	T	T	Q	G	P	L	I	N	E	K	A	V	E	K	V	E	K	Q	V	N	D	A	V	S	K	G	A	T	V	V	T	G	G	K	R	H	Q	L	G	K	N	F	F	E	P	T	L	L	C	N	V	T	Q	D	M	L	C	T	H	E	E	T	F	G	P	L	A	P	V	I	K
Template Known Secondary structure			B	S		T	T	S	T	T			B				S	S																T	T	T								S	B		T	T		T	T		B							S			G	G	G	G	T	T		T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	D	E	A	D	V	I	A	Q	A	N	D	T	E	F	G	L	A	A	Y	F	Y	A	R	D	L	S	R	V	F	R	V	G	E	A	L	E	Y	G	I	V	G	I	N	T	G	I	I	S	N	E	V	A	P	F	G	G	I	K	A	S	G	L	G	R	E	G	S	K	Y	G	I	E	D	Y	L	E	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	D	T	E	E	E	A	I	A	I	A	N	A	A	D	V	G	L	A	G	Y	F	Y	S	Q	D	P	A	Q	I	W	R	V	A	E	Q	L	E	V	G	M	V	G	V	N	E	G	L	I	S	S	V	E	C	P	F	G	G	V	K	Q	S	G	L	G	R	E	G	S	K	Y	G	I	D	E	Y	L	E	L	K
Template Known Secondary structure			S										T		S	S			S																			S		S	S					S		S					T	T	S		B			S	G	G	G			S		B	S	T	T	T	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		477	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	C	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	C	Y	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.