 |
Job Description | P33011 | Confidence | 4.73% | Date | Thu Jan 5 11:50:46 GMT 2012 |
Rank | 31 | Aligned Residues | 82 |
% Identity | 13% | Template | c3f0gA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; |
PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp
|
Resolution | 2.08 Å |
|
 |
  |   |
132 | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | S | P | T | G | E | I | D | T | A | L | W | R | S | G | D | V | I | L | G | S | L | L | A | M | L | F | T | G | I | W | P | Q | R | A | F | I | H | W | R | I | Q | L | A | K | S | L | T | E | Y | N | R | V | Y | Q | S | A | F | S | . |
. |
. |
. |
. |
. |
. |
P | N | L | L | E | R | P | R | L | E | S | H | L | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |
|
|
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|   |   |
|
|
|   |
|   |   |   |
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|   |
|
|
|   |   |   |
|
|
|   |
|   |   |   |
Template Sequence |   |
L | L | G | H | S | D | A | D | V | L | L | H | A | I | T | D | A | L | F | G | A | A | A | L | G | D | I | G | R | H | F | S | D | T | D | P | R | F | K | G | A | D | S | R | A | L | L | R | E | C | A | S | R | V | A | Q | A | G | F | A | I | R | N | V | D | S | T | I | I | A | Q | A | P | K | L | A | P | H | I | D |
Template Known Secondary structure |   |
 |
| S | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  | S |
| S | S |
| T | T | S | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |
|
| G | G | G |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
  |
  |   |
205 | . | . | . | . | 210 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | L | T | D | A | V | K | M |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|
|   |   |
Template Sequence |   |
A | M | R | A | N | I | A | A | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
113 | . | . | . | . | . | . | 120 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|