 |
Job Description | P75794 | Confidence | 97.87% | Date | Thu Jan 5 12:14:13 GMT 2012 |
Rank | 22 | Aligned Residues | 125 |
% Identity | 18% | Template | d1kqfb1 |
SCOP info | Ferredoxin-like
| 4Fe-4S ferredoxins
| Ferredoxin domains from multidomain proteins
|
Resolution | 1.60 |
|
 |
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | |
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|
| . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | Q | R | Y | S | T | H | D | G | P | G | I | R | T | V | V | F | L | K | G | C | S | L | G | C | R | W | C | Q | N | . |
. |
. |
. |
. |
. |
. |
. |
P | E | S | R | A | R | T | Q | D | . |
. |
. |
L | L | Y | D | A | R | L | C | L | E | G | C | E | L | C | A | K | A | A | P | E | V | I | E | R | A | L | N | G | L |
Query Conservation |   |
|   |   |   |
|   |   |
|
|
|
|   |
|   |   |
|
|   |   |
|
|   |
|   |
|   |   |
|   |
| . | . | . | . | . | . | . | . |
|
|   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |
|   |
|
|   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |
|
| . |
|
|   |   |
|   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |
Template Sequence |   |
M | R | F | S | E | T | E | Q | N | G | K | L | E | W | L | I | . |
. |
. |
. |
R | K | D | G | C | M | H | C | E | D | P | G | C | L | K | A | C | P | S | A | G | A | I | I | Q | Y | A | N | G | I | V | D | F | Q | S | E | N | C | I | . |
G | C | G | Y | C | I | A | G | C | P | F | N | I | P | R | L | N | K | E | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| T | T | S | S |
|  |  |  |  | . | . | . | . |  |  |  | S |
|
|
| B | S | S |
|  |  |  |  |  |
|
| S | T | T | S |  |  |  |  | T | T | S |
|  |  |  |
| G | G | G |
|
| . |
|
|
|  |  |  |  |  |
| T | T |
|
|
|  |  |  | T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . | . | . |  |
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | |
|
|
|
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
  |
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | |
|
. | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|
|  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | H | R | E | K | L | T | P | E | H | L | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
A | L | T | D | C | C | P | T | Q | A | L | T | V | C | G | E | V | K | S | V | E | E | I | M | T | T | V | L | R | D | K | P | F | Y | D | R | S | . |
. |
G | G | G | L | T | L | S | G | G | E | P | F | M | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . | . | . |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . |   |   |
|
|
|   |
|
|
|
|
|   |
|   |
Alig confidence |   |
|
|
|
| . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   | . | . | . |
|
|   |   |
|   |   |
|   |   |   |
|   |   |
|
|
|
|   |   |
|
|   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|
Template Sequence |   |
N | R | V | Y | . |
. |
. |
K | C | T | L | C | V | D | R | V | S | V | G | Q | E | P | A | C | V | K | T | C | P | T | G | A | I | H | F | G | T | K | K | E | M | L | E | L | A | E | Q | R | V | A | K | L | K | A | R | G | Y | E | H | A | G | V | Y | N | P | E | G | V | G | G | T | H | V | M | Y |
Template Known Secondary structure |   |
T |  |  |  | . | . | . |
|
|
| T | T |  |  |  |  | T | T | T |
|
|
|  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T |
|  |  |  |
|
| G | G | G | T |
| B | S |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  | . | . | . |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
155 | . | . | . | |
|
|
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|