 |
Job Description | P75794 | Confidence | 64.00% | Date | Thu Jan 5 12:14:13 GMT 2012 |
Rank | 112 | Aligned Residues | 77 |
% Identity | 10% | Template | c3blpX_ |
PDB info |
PDB header:hydrolase | Chain: X: PDB Molecule:alpha-amylase 1; |
PDBTitle: role of aromatic residues in human salivary alpha-amylase
|
Resolution | 1.60 Å |
|
 |
  |   |
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | |
. | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | |
|
. | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | |
|
|
|
. | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | L | I | Q | G | F | N | A | D | E | T | S | V | . |
K | A | I | T | D | F | A | A | D | E | L | H | V | G | E | I | H | F | L | P | Y | H | . |
. |
T | L | G | I | N | K | Y | H | L | L | N | L | P | Y | D | A | P | E | K | P | L | D | A | . |
. |
. |
. |
P | E | L | L | D | F | A | Q | Q | Y | A | C | Q | K | G |
Query Conservation |   |
  |   |
|   |   |   |
|
|   |   |   |
|
| . |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |   | . | . |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|
|   |   |
| . |
|   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|   |   |   |
|
|   |   |
|
|
|   |
|
|   |   |
|
|   |   |
|
Template Sequence |   |
S | I | V | H | L | F | E | W | R | W | V | D | I | A | L | E | C | E | R | Y | L | A | P | K | . |
G | F | G | G | V | Q | V | S | P | P | N | E | N | V | A | I | H | N | P | F | R | P | W | W | E | R | Y | Q | P | V | S | Y | K | L | C | T | R | S | G | N | E | D | E | F | R | N | M | V | T | R | C | N | N | V | G |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | T | T | . | T |
|
|  |  |  |  |
|
|
| S |
| B | B |
|
| T | T | T | T | S |
| G | G | G | G | G | S | B | S |
| S |
| S |
| B | T | T | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | |
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
  |
  |   |
293 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
L | T | A | T | L |
Query Conservation |   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
Template Sequence |   |
V | R | I | Y | V |
Template Known Secondary structure |   |
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
91 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|