Job Description P75794 Confidence 98.25% Date Thu Jan 5 12:14:13 GMT 2012 Rank 13 Aligned Residues 177 % Identity 15% Template c2qgqF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																.	.	.	.	.	.																											.	.
Query SS confidence																																																.	.	.	.	.	.																											.	.
Query Sequence		C	C	P	T	Q	A	L	T	V	C	G	E	V	K	S	V	E	E	I	M	T	T	V	L	R	D	K	P	F	Y	D	R	S	G	G	G	L	T	L	S	G	G	E	P	F	M	.	.	.	.	.	.	Q	P	E	M	A	M	A	L	L	Q	A	S	H	E	A	G	I	H	T	A	V	E	T	C	L	H	.	.
Query Conservation																																																.	.	.	.	.	.																											.	.
Alig confidence																											.	.	.																			.	.	.	.	.	.																											.	.
Template Conservation																											.	.	.
Template Sequence		Y	A	Y	V	K	I	S	D	G	S	L	R	S	R	S	I	E	D	I	T	R	E	V	E	D	.	.	.	L	L	K	E	G	K	K	E	I	I	L	V	A	Q	D	T	T	S	Y	G	I	D	L	Y	R	K	Q	A	L	P	D	L	L	R	R	L	N	S	L	N	G	E	F	W	I	R	V	X	Y	L	H	P
Template Known Secondary structure								B						B													.	.	.				T	T									S		G	G	G	T	T	T	T	T	T	S	S												T	S	S	S	S										G
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
				163	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.													.	.	.																					.																																.
Query SS confidence		.	.													.	.	.																					.																																.
Query Sequence		.	.	V	P	W	K	Y	I	A	P	S	L	P	Y	.	.	.	I	D	L	F	L	A	D	L	K	H	V	A	D	A	P	F	K	Q	W	T	.	D	G	N	A	A	R	V	L	D	N	L	K	K	L	A	A	A	G	K	K	I	I	I	R	V	P	L	I	Q	G	F	.	N	A	D	E	T	S	V	K	A	I
Query Conservation		.	.													.	.	.																					.																																.
Alig confidence		.	.													.	.	.																					.																																.
Template Conservation
Template Sequence		D	H	L	T	E	E	I	I	S	A	X	L	E	L	D	K	V	V	K	Y	F	D	V	P	V	Q	H	G	S	D	K	I	L	K	L	X	G	R	T	K	S	S	E	E	L	K	K	X	L	S	S	I	R	E	R	F	P	D	A	V	L	R	T	S	I	I	V	G	F	P	G	E	T	E	E	D	F	E	E	L
Template Known Secondary structure		G	G													T	T	B		S							B		S									T			S																	T	T										S		T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	F	A	A	D	E	L	H	V	G	E	I	H	F	L	P	Y	H	T	L	G	I	N	K	Y	H	L	L	N	L	P	Y	D	A	P	E	K	P	L	D	A	P	E	L	L	D	F	A	Q	Q	Y	A	C
Query Conservation
Alig confidence									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	F	V	E	E	I	.	Q	F	D	K	L	G	A	F	V	Y	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	D	P	E	X	A	K	R	R	Q	E	E	L	L	L
Template Known Secondary structure									.			S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.																			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions