Job Description P71239 Confidence 100.00% Date Thu Jan 5 12:12:31 GMT 2012 Rank 3 Aligned Residues 232 % Identity 12% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		2	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		L	L	S	I	I	T	V	A	F	R	N	L	.	E	G	I	V	K	T	H	A	S	L	A	H	L	A	Q	V	E	D	I	S	F	E	W	I	V	V	D	G	G	S	N	D	G	T	R	E	Y	L	E	N	L	N	G	I	F	N	L	R	F	V	S	E	P	D	N	G	I	Y	D	A	M	N	K	G	I	A	M
Query Conservation														.
Alig confidence														.																	.																												.
Template Conservation																															.																												.
Template Sequence		A	T	S	V	V	I	T	F	H	N	E	A	R	S	A	L	L	R	T	V	V	S	V	L	K	K	S	P	P	.	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	D	G	A	L	L	G	K	I	E	K	.	V	R	V	L	R	N	D	R	R	E	G	L	M	R	S	R	V	R	G	A	D	A
Template Known Secondary structure										S	S																	S		G	.	G	G										S		S		T					G	G	G	G	B	T	T	.							S	S
Template Predicted Secondary structure																															.																												.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	G	K	F	A	L	F	L	N	S	G	D	I	F	H	Q	N	A	A	N	F	V	R	K	L	K	M	Q	K	D	N	V	M	I	T	G	D	A	L	L	D	F	G	D	G	H	K	I	K	R	S	A	K	P	G	W	Y	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	A	K	V	L	T	F	L	D	S	H	C	E	C	N	E	H	W	L	E	P	L	L	E	R	V	A	E	D	R	T	R	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q	Y	V	G	A	S	A	D	L	K	G	G	F	D	W	N	L	V	F	K	W	D	Y	M	T	P	E	Q	R	R	S	R	Q
Template Known Secondary structure				S	S							S	S					T	T													T	T												T	T	T								S	S							T	T																T	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
									141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.	.	.	.	.																				.										.	.
Query SS confidence		.	.	.	.	.	.	.																				.										.	.
Query Sequence		.	.	.	.	.	.	.	H	S	L	P	A	S	H	Q	A	I	F	F	P	V	S	G	L	K	K	.	W	R	Y	D	L	E	Y	K	V	.	.	S	S	D	Y	A	L	A	A	K	M	Y	K	A	G	Y	A	F	K	K	L	N	G	L	V	S	E	F	S	M	G	G	V	S	T	T	N	N	M	E	L	C	A
Query Conservation		.	.	.	.	.	.	.																				.										.	.
Alig confidence		.	.	.	.	.	.	.																				.										.	.
Template Conservation
Template Sequence		G	N	P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	L	G	K	Y	D	M	M	M	D	V	W	G	G	E	N	L	E	I	S	F	R	V	W	Q	C	G	G	S	L	E	I	I	P	C	S	R	V	G	H	V	F	R	K	Q	H	P	Y	T	F	P	G	G	S	G
Template Known Secondary structure		S		T	T	S					S	S			S	S	S											T	T				T	T			S	S	S	S												T	T																	S	S			S			T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	K	K	V	Q	R	Q	I	L	H	V	P	G	F	W	A	E	L	S	W	H	L	R	Q	R	T
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		T	V	.	.	F	A	R	N	T	R	R	A	A	E	V	W	M	D	E	Y	K	N	F	Y	Y	A	A
Template Known Secondary structure				.	.														G	G	G
Template Predicted Secondary structure				.	.
Template SS confidence
		375	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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