 |
Job Description | P0AEN1 | Confidence | 20.54% | Date | Thu Jan 5 11:23:45 GMT 2012 |
Rank | 94 | Aligned Residues | 115 |
% Identity | 10% | Template | c3h75A_ |
PDB info |
PDB header:sugar binding protein | Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; |
PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
|
Resolution | 1.60 Å |
|
 |
  |   |
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | F | S | Y | A | R | S | I | L | L | T | A | L | A | R | N | P | N | R | D | I | T | I | Y | W | G | G | R | E | E | Q | H | L | Y | D | L | C | E | L | E | A | L | S | L | K | H | P | G | L | Q | V | V | P | V | V | E | Q | P | E | A | G | W | R | G | R | T | G | T | V | L | T | A | V | L | Q | D | H | G | T | L |
Query Conservation |   |
|
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
G | Y | R | X | L | K | E | L | L | H | K | L | G | P | V | P | A | G | H | G | I | E | L | L | A | F | S | G | L | K | V | T | P | A | A | Q | L | R | E | R | G | L | R | R | A | L | A | E | H | P | Q | V | H | L | R | Q | L | V | Y | G | E | W | N | R | E | R | A | Y | . |
. |
R | Q | A | Q | Q | L | L | K | R | Y |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| S | S |
|
|  |  |  |  |  |  |  | S |
| T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | |
|
230 | . | . | . | . | . | . | . | . | . |
  |
  |   |
194 | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | |
. | . | . | . | . | . | . | . | . | 230 | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | E | H | D | I | Y | I | A | G | R | F | E | M | A | K | I | A | R | D | L | F | C | S | E | R | N | A | . |
R | E | D | R | L | F | G | D | A | F | A |
Query Conservation |   |
  |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   | . |   |   |   |   |
|   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|   |   |   |
|
|   |   |
|   |
|
|   |   |
|
| . |   |   |   |
|   |   |   |   |   |
|
|   |
|   |
|   |
|
Template Sequence |   |
P | K | T | Q | L | V | W | S | A | N | D | E | X | A | L | G | A | X | Q | A | A | . |
R | E | L | G | R | K | P | G | T | D | L | L | F | S | G | V | N |
Template Known Secondary structure |   |
T | T |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  | . |  |  | T | T |
|
| B | T | T | T | B |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  | . |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | |
. | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|