Job Description P0AEN1 Confidence 100.00% Date Thu Jan 5 11:23:45 GMT 2012 Rank 4 Aligned Residues 228 % Identity 18% Template c2r6hC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis Resolution 2.95 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																																	.	.	.	.	.
Predicted Secondary structure																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	T	L	S	C	K	V	T	S	V	E	A	I	T	D	T	V	Y	R	V	R	I	V	P	D	.	.	A	A	F	S	F	R	A	G	Q	Y	L	M	V	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	R	D	K
Query Conservation																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	E	W	E	C	E	V	L	S	N	K	N	V	S	T	F	I	K	E	F	V	V	K	L	P	E	G	E	T	X	N	F	K	S	G	S	Y	A	Q	I	K	I	P	K	Y	N	I	R	Y	A	D	Y	D	I	Q	D	R	F	R	G	D	W	D	K	X	D	A	W	S	L	T	C	K	N	E	E	E	T	V
Template Known Secondary structure															S	S	S	S									S	T	T							T	T														G	G	G															T	G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70															.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	F	S	M	A	S	T	P	D	E	K	G	F	I	E	L	H	I	G	A	S	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	Y	A	K	A	V	M	D	R	I	L	K	D	H	Q	I	V	V	D	I	P	H	G	E	A	W	L	R	D	D	E	E	R	P	M	I	L	I	A	G	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																																					.
Template Sequence		R	A	Y	S	X	A	N	Y	P	A	E	G	N	I	I	T	L	N	V	R	I	A	T	P	P	F	D	R	A	A	N	K	W	K	A	G	I	K	P	G	I	S	S	S	Y	I	F	S	L	K	P	G	D	K	V	X	X	S	G	P	Y	G	D	F	H	I	Q	.	D	T	D	A	E	X	L	Y	I	G	G	G
Template Known Secondary structure								S		T	T			S															T	T	T	T				T	T												T			T	T																.		S	S	S								G
Template Predicted Secondary structure																																																																					.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																											.	.
Query SS confidence																		.																																											.	.
Query Sequence		T	G	F	S	Y	A	R	S	I	L	L	T	A	L	A	R	.	N	P	N	R	D	I	T	I	Y	W	G	G	R	E	E	Q	H	L	Y	D	L	C	E	L	E	A	L	S	L	K	H	P	G	L	Q	V	V	P	V	V	E	Q	.	.	P	E	A	G	W	R	G	R	T	G	T	V	L	T	A	V	L	Q	D
Query Conservation																		.																																											.	.
Alig confidence																		.																																											.	.
Template Conservation
Template Sequence		A	G	X	A	P	L	R	A	Q	I	L	H	L	F	R	T	L	K	T	G	R	K	V	S	Y	W	Y	G	A	R	S	K	N	E	I	F	Y	E	E	D	F	R	E	I	E	R	E	F	P	N	F	K	F	H	I	A	L	S	D	P	Q	P	E	D	N	W	T	G	Y	V	G	F	I	H	Q	V	I	Y	D	N
Template Known Secondary structure		G	G														T	S				S									S	S	G	G	G			S												T	T								S	S			G	G	G				S			S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		H	G	.	.	.	.	T	L	A	E	H	D	I	Y	I	A	G	R	F	E	M	A	K	I	A	R	D	L	F	C	S	E	R	N	A	R	E	D	R	L	F	G	D	A	F
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.																								.
Template Conservation																															.
Template Sequence		Y	L	K	D	H	D	A	P	E	D	I	E	Y	Y	X	C	G	P	G	P	X	A	N	A	V	K	G	X	L	.	E	N	L	G	V	P	R	N	X	L	F	F	D	D	F
Template Known Secondary structure		T	T	T	T		S		G	G	G																				.				T			G	G	G
Template Predicted Secondary structure																															.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions