Job Description P23898 Confidence 97.84% Date Thu Jan 5 11:40:30 GMT 2012 Rank 12 Aligned Residues 118 % Identity 30% Template d2im9a1 SCOP info Cysteine proteinases Cysteine proteinases Lpg0564-like Resolution 1.67

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.															.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	I	T	V	I	A	G	L	N	D	Q	L	Q	S	W	H	G	T	P	Y	R	Y	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	T	R	R	G	V	D	C	S	G	F	V	V	V	T	M	R	D	R	F	D	L	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	T	S	M	A	D	R	I	S	Q	I	S	A	Y	F	K	G	T	K	Y	I	L	G	S	L	G	E	G	P	N	A	R	Y	D	Q	F	P	R	Y	R	V	D	G	F	D	C	D	T	Y	V	N	T	V	L	S	L	A	L	A	N	S	L	E	S	F	Q	E	C	L	K	H	T	R	Y	K	N	G	K	R
Template Known Secondary structure		T															T	T	T		B	B		T	T				S		T	T		S	S	B		S		S	S		S	S		B																S	S													B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
											79		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	P	.	R	E	T	K	Q	Q	A	S	I	G	T	Q	I	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Y	I	N	R	N	H	F	T	S	I	D	W	N	N	Y	N	Q	K	R	G	L	L	K	D	I	T	F	S	I	R	N	E	K	K	Q	P	V	A	L	Y	A	N	A	L	I	N	K	P	Q	W	Y	N	H	K	T	I	D	T	I	R	L	Q	K	Q	D	K	N	E	Q	E	K	R	L	V	E	L	K	A	K
Template Known Secondary structure		S	T	T	T	B			S	T	T	T	T								T	T	S					G	G	G		B		T	T	S		B																	T			G	G	G		B		S	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
																																95	.	.	.	.	100	.	.	.	.	.	.	.	.										.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.													.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.													.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	L	L	P	G	D	L	V	F	F	K	T	G	.	.	.	.	.	.	.	.	.	S	G	Q	N	G	L	H	V	G	I	Y	D	.	.	.	T	N	N	Q	F	I	H	A	S	T	S	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		G	K	T	L	E	T	S	L	S	N	V	P	Y	I	P	F	T	A	L	F	S	E	N	K	P	N	L	H	L	F	S	Q	I	P	N	G	A	V	I	E	I	I	R	P	N	W	D	L	R	Q	Q	I	G	T	E	L	D	I	S	H	L	G	F	A	I	W	I	N	N	E	L	F	F	R	Q	A	S	S	Q	Y
Template Known Secondary structure			T	T																	T	G	G	G	S							T	T	S		T	T																	S	S														T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	M	R	S	S	L	D	N	V	Y	W	Q	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	V	V	D	V	S	L	I	D	Y	L	D	K	A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions