Job Description P23898 Confidence 99.50% Date Thu Jan 5 11:40:30 GMT 2012 Rank 11 Aligned Residues 117 % Identity 25% Template c2p1gA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis Resolution 1.80 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																.	.	.								.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.								.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	D	Q	L	Q	S	W	H	G	T	P	Y	R	.	.	.	Y	G	G	M	T	R	R	.	.	.	.	.	.	.	G	V	D	C	S	G	F	V	V	V	T	M	R	D	R	F	D	L	Q	L	P	R	E	T	K	Q	Q	A	S	I	G	T	Q	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.								.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.								.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	S	N	G	L	G	F	V	D	T	P	Y	K	A	G	T	L	E	V	D	D	T	E	D	L	I	I	N	C	D	E	V	D	C	T	T	F	V	E	Y	A	L	A	M	A	L	C	P	Q	Q	E	M	Q	E	G	D	F	A	R	N	L	Q	R	I	R	Y	R	D	G	K	I	D	G	Y	T	S	R	L	H
Template Known Secondary structure								T	T	T	T		B	B		T	T	T	T	S		S	S	S							T	T	S	B														T	S	S																		B	G	G	G				S	G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
																																																																																94	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	I	S	D	W	I	N	N	A	V	R	Q	G	L	L	E	D	V	T	A	A	Y	S	P	F	K	Q	K	L	S	L	S	Y	M	S	T	H	P	E	L	Y	K	S	L	K	N	S	P	E	N	V	A	Q	M	A	K	Y	E	K	A	L	S	G	K	E	V	H	Y	L	P	K	D	K	L	E	P	D	G	L	P
Template Known Secondary structure		S											T	T	S	S																							G	G	G		T	T	T	T	T																T	T								G	G	G			T	T			T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																			.									.	.	.														.												.	.
Query SS confidence																			.									.	.	.														.												.	.
Query Sequence		E	L	L	P	G	D	L	V	F	F	K	T	G	S	G	Q	N	.	G	L	H	V	G	I	Y	D	.	.	.	T	N	N	Q	F	I	H	A	S	T	S	K	G	.	V	M	R	S	S	L	D	N	V	Y	W	.	.	Q	K	N	F	W	Q	A	R	R	I
Query Conservation																			.									.	.	.														.												.	.
Alig confidence																			.									.	.	.														.												.	.
Template Conservation
Template Sequence		W	I	K	N	G	D	I	I	A	L	T	T	N	T	P	G	L	D	V	S	H	M	G	I	A	I	Y	I	K	G	Q	L	H	L	L	H	A	S	S	K	E	G	K	V	V	V	G	K	T	A	L	S	Q	M	L	K	D	R	K	S	L	T	G	I	R	V
Template Known Secondary structure		T	S		T	T									S	T	T		S											T	T									T	T	T	T						S	S								T		T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions