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Job DescriptionP23898
Confidence99.50%DateThu Jan 5 11:40:30 GMT 2012
Rank11Aligned Residues117
% Identity25%Templatec2p1gA_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50. ....... .60.........70.........80.........90...
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Query Sequence  LNDQLQSWHGTPYR. . . YGGMTRR. . . . . . . GVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQID. . . . . . . . . . . . . .
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Template Sequence  VLSNGLGFVDTPYKAGTLEVDDTEDLIINCDEVDCTTFVEYALAMALCPQQEMQEGDFARNLQRIRYRDGKIDGYTSRLH
Template Known Secondary structure 
TTTT
BB
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TTSB
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BGGG


SGGGB

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   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   94.
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Template Sequence  YISDWINNAVRQGLLEDVTAAYSPFKQKLSLSYMSTHPELYKSLKNSPENVAQMAKYEKALSGKEVHYLPKDKLEPDGLP
Template Known Secondary structure  STTSS







GGG
TTTTT
TT

GGG

TT

T
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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   96...100.........110.. .......120 .........130... ......140.... .....150....
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Query Sequence  ELLPGDLVFFKTGSGQN. GLHVGIYD. . . TNNQFIHASTSKG. VMRSSLDNVYW. . QKNFWQARRI
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Template Sequence  WIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSKEGKVVVGKTALSQMLKDRKSLTGIRV
Template Known Secondary structure  TS
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STT
STTTTTT
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   188.190.........200.........210.........220.........230.........240.........250...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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