Job Description P32662 Confidence 98.65% Date Thu Jan 5 11:49:55 GMT 2012 Rank 106 Aligned Residues 122 % Identity 31% Template c3zvmA_ PDB info PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	V	A	F	D	L	D	G	T	L	V	D	S	A	P	G	L	A	A	A	V	D	M	A	L	Y	A	L	E	L	P	V	A	G	E	E	R	V	I	T	W	I	G	N	G	A	D	V	L	M	E	R	A	L	T	W	A	R	Q	E	R	A	T	Q	R	K	T	M	G	K	P	P	V	D	D	D	I	P	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	A	A	F	D	L	D	G	T	L	I	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	G	K	V	F	P	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S						S	B	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	S		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.														.	180	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.													.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																												.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	Q	V	R	I	L	R	K	L	F	D	R	Y	Y	G	E	V	A	E	E	G	T	F	L	F	.	P	H	V	A	D	T	L	G	A	L	Q	A	K	G	L	P	L	G	L	V	T	N	K	P	.	.	.	.	.	.	.	.	.	.	.	.	T	P	F	V	A	P	L	L	E	A	L	D	I	A	K	Y	F
Query Conservation																												.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.																									.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	D	W	R	I	L	Y	P	E	I	P	K	K	L	Q	E	L	A	A	E	G	Y	K	L	V	I	F	T	N	Q	M	G	I	G	R	G	K	L	P	A	E	V	F	K	G	K	V	E	A	V	L	E	K	L	G	V	P	F	Q	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					S		T	T											T	T														T	T	S	S																	T	S				.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.
Template SS confidence
																					188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.					.	.	.	.	.	.	.	.	190	.	.																		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	V	I	G	G	D	D	V	Q	N	K	K	P	H	P	D	P	L	L	L	V	A	E	R	M	G	.	.	.	.	I	A	P	Q	Q	M	L	F	V	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	N	D	I	Q	A	A	K	A	A	G	C	P	S
Query Conservation																													.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																											.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	V	L	V	A	T	H	A	G	L	N	R	K	P	V	S	G	M	W	D	H	L	Q	E	Q	A	N	E	G	I	P	I	S	V	E	D	S	V	F	V	G	D	A	A	G	R	L	A	N	W	A	P	G	R	K	K	K	D	F	S	C	A	D	R	L	F	A	L	N	V	G	L	P	F
Template Known Secondary structure		.						S	S	S	T	T	S	T	T	S											S	S	T	T					S	T	T						S				B		T	T		B	T	T	B		S			S												T
Template Predicted Secondary structure		.
Template SS confidence
			248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions