Job Description P32662 Confidence 98.35% Date Thu Jan 5 11:49:55 GMT 2012 Rank 123 Aligned Residues 223 % Identity 12% Template c3gygA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:ntd biosynthesis operon putative hydrolase ntdb; PDBTitle: crystal structure of yhjk (haloacid dehalogenase-like hydrolase2 protein) from bacillus subtilis Resolution 2.45 Å

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		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure						.																			.	.	.	.	.	.	.	.	.																																												.	.	.	.	.
Query SS confidence						.																			.	.	.	.	.	.	.	.	.																																												.	.	.	.	.
Query Sequence		M	N	K	F	.	E	D	I	R	G	V	A	F	D	L	D	G	T	L	V	D	S	A	.	.	.	.	.	.	.	.	.	P	G	L	A	A	A	V	D	M	A	L	Y	A	L	E	L	P	V	A	G	E	E	R	V	I	T	W	I	G	N	G	A	D	V	L	M	E	R	A	L	T	W	A	.	.	.	.	.
Query Conservation						.																			.	.	.	.	.	.	.	.	.																																												.	.	.	.	.
Alig confidence						.																			.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		L	S	T	V	E	H	P	Q	Y	I	V	F	C	D	F	D	E	T	Y	F	P	H	T	I	D	E	Q	K	Q	Q	D	I	Y	E	L	E	D	Y	L	E	Q	K	S	K	D	G	E	L	I	I	G	W	.	.	.	.	.	.	V	T	G	S	S	I	E	S	I	L	D	K	X	G	R	G	K	F	R	Y	F	P
Template Known Secondary structure						S	S		S							T	B	T	T	T	B		S	S																						T	T							.	.	.	.	.	.			S	S												T	T			B
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
									66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	R	Q	E	R	A	T	Q	R	K	T	M	G	K	P	P	V	D	D	D	I	P	A	E	E	Q	V	R	I	L	R	K	L	F	D	R	Y	Y	G	E	V	A	E	E	G	T	F	L	F	P	H	V	A	D	T	L	G	A	L	Q	A	K	G	L	P	L	G	L	V	T	N	K	P	T
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	F	I	A	S	D	L	G	T	E	I	T	Y	F	S	E	H	N	F	G	Q	Q	D	N	K	W	N	S	R	I	N	E	G	F	S	K	E	K	V	E	K	L	V	K	Q	L	H	E	N	H	N	I	L	L	N	P	Q	T	Q	L	G	K	S	R	Y	K	H	N	F	Y	Y	Q	E	Q	D	E	I	N	D	K
Template Known Secondary structure		S					T	T	T	T							S	S	S	T	T												T	T																	S	S						G	G	G	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.														.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	V	A	P	L	L	E	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	A	K	Y	F	S	V	V	I	G	G	D	D	V	Q	N	K	K	P	H	P	D	P	L	L	L	V	A	E	R	M	G	I	A	P	Q	Q	M	L	F	V	G	D	S	R	N	D	I	Q	A	A	K	A	A	G	C
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.
Template Conservation																																																																																	.
Template Sequence		K	N	L	L	A	I	E	K	I	C	E	E	Y	G	V	S	V	N	I	N	R	C	N	P	L	A	G	D	P	E	D	S	Y	D	V	D	F	I	P	I	G	T	G	K	N	E	I	V	T	F	X	L	E	K	Y	N	L	N	T	E	R	A	I	A	F	G	D	S	G	N	D	V	R	X	L	Q	T	V	G	.
Template Known Secondary structure															T										G	G	G	T			T	T									S			S													T			G	G	G							S	G	G	G					T	T	S	S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	V	G	L	T	Y	G	Y	N	Y	G	E	A	I	D	L	S	Q	P	D	V	I	Y	Q	S	I	N	D
Query Conservation
Alig confidence		.	.													.	.
Template Conservation		.	.													.	.
Template Sequence		.	.	N	G	Y	L	L	K	N	A	T	Q	E	A	.	.	K	N	L	H	N	L	I	T	D	S	E	Y	S
Template Known Secondary structure		.	.						T	T						.	.							B		S	S
Template Predicted Secondary structure		.	.													.	.
Template SS confidence
				245	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions