Job Description P32662 Confidence 99.39% Date Thu Jan 5 11:49:55 GMT 2012 Rank 85 Aligned Residues 145 % Identity 22% Template c3e8mD_ PDB info PDB header:transferase Chain: D: PDB Molecule:acylneuraminate cytidylyltransferase; PDBTitle: structure-function analysis of 2-keto-3-deoxy-d-glycero-d-galacto-2 nononate-9-phosphate (kdn) phosphatase defines a new clad within the3 type c0 had subfamily Resolution 1.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	D	I	R	G	V	A	F	D	L	D	G	T	L	V	D	S	A	P	G	L	A	A	A	V	D	M	A	L	Y	A	L	E	L	P	V	A	G	E	E	R	V	I	T	W	I	G	N	G	A	D	V	L	M	E	R	A	L	T	W	A	R	Q	E	R	A	T	Q	R	K	T	M	G	K	P	P	V	D	D
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	E	I	K	L	I	L	T	D	I	D	G	V	W	T	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S						S	T	T	T	T	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	P	A	E	E	Q	V	R	I	L	R	K	L	F	D	R	Y	Y	G	E	V	A	E	E	G	T	F	L	F	P	H	V	A	D	T	L	G	A	L	Q	A	K	G	L	P	L	G	L	V	T	N	K	P	T	P	F	V	A	P	L	L	E	A	L	D	I	A	K	Y	F	S	V	V	I	G	G	D	D	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	F	Y	D	Q	T	G	N	E	W	K	K	F	N	T	S	D	S	A	G	I	F	W	A	H	N	K	G	I	P	V	G	I	L	T	G	E	K	T	E	I	V	R	R	R	A	E	K	L	K	V	D	Y	L	F	Q	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S								G	G	G										T	T								S													T	T		S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.	.	.	.	.	.
Template SS confidence
																	19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.
Query Sequence		Q	N	K	K	P	H	P	D	P	L	L	L	V	A	E	R	M	G	I	A	P	Q	Q	M	L	F	V	G	D	S	R	N	D	I	Q	A	A	K	A	A	G	C	P	S	V	G	L	T	Y	G	Y	N	Y	G	E	A	I	D	L	S	Q	P	D	V	I	Y	Q	S	.	.	.	.	.	.	I	N	D	L	L	P
Query Conservation																																																																						.	.	.	.	.	.
Alig confidence		.																																										.							.	.	.	.																.	.	.	.	.	.
Template Conservation		.																																										.							.	.	.	.
Template Sequence		.	G	V	V	D	K	L	S	A	A	E	E	L	C	N	E	L	G	I	N	L	E	Q	V	A	Y	I	G	D	D	L	N	D	A	K	L	L	K	R	V	G	I	.	A	G	V	P	A	S	.	.	.	.	A	P	F	Y	I	R	R	L	S	T	I	F	L	E	K	R	G	G	E	G	V	F	R	E	F	V	E
Template Known Secondary structure		.	S		S														T			G	G	G							S	G	G	G					T	T	S	S		.					T	T	.	.	.	.	S						T	T		S	S						T	T	T	T
Template Predicted Secondary structure		.																																										.							.	.	.	.
Template SS confidence
			76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		238	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		150	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions