Job Description P0AFB5 Confidence 99.16% Date Thu Jan 5 11:25:49 GMT 2012 Rank 43 Aligned Residues 115 % Identity 14% Template c3lyxA_ PDB info PDB header:transcription Chain: A: PDB Molecule:sensory box/ggdef domain protein; PDBTitle: crystal structure of the pas domain of the protein cps_12912 from colwellia psychrerythraea. northeast structural3 genomics consortium target id csr222b Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		T	Q	P	D	A	G	Q	I	L	N	S	L	I	N	S	I	L	L	I	D	D	N	L	A	I	H	Y	A	N	P	A	A	Q	Q	L	L	A	Q	S	S	R	K	L	F	G	T	P	L	P	E	L	L	S	Y	F	S	L	N	.	.	I	E	L	M	Q	E	S	L	E	A	G	Q	G	F	T	D	N	E	V	T
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		I	L	K	Q	R	A	K	A	F	D	Y	V	F	D	A	I	V	V	T	D	L	Q	G	F	I	I	D	W	N	K	G	S	E	T	L	Y	G	Y	S	K	E	Q	A	I	G	Q	P	V	N	M	L	H	V	P	G	D	T	E	H	I	T	S	E	V	I	S	A	V	E	N	Q	G	K	W	T	G	E	I	R	M
Template Known Secondary structure									G	G	G	T		S	S							T	T		B																				T	T	S	B	G	G	G	G	S		T	T	T															T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	I	D	G	R	S	H	I	L	S	V	T	A	Q	R	M	P	D	G	M	I	L	L	E	M	A	P	M	D	N	Q	R	R	L	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	K	D	G	H	I	G	W	I	E	S	M	C	V	P	I	Y	G	E	N	Y	Q	M	V	G	A	L	G	I	N	R	D	I	T	K	R
Template Known Secondary structure				T	T	S															S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions