Job Description P0AFB5 Confidence 98.07% Date Thu Jan 5 11:25:49 GMT 2012 Rank 89 Aligned Residues 91 % Identity 20% Template c3h4lB_ PDB info PDB header:dna binding protein, protein binding Chain: B: PDB Molecule:dna mismatch repair protein pms1; PDBTitle: crystal structure of n terminal domain of a dna repair protein Resolution 2.50 Å

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		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		D	Q	I	E	Q	V	L	L	N	I	V	R	N	A	L	Q	A	L	G	P	E	G	G	E	I	I	L	R	T	R	T	A	F	Q	L	T	L	H	G	E	R	Y	R	L	A	A	R	I	D	V	E	D	N	G	P	G	I	P	P	H	L	Q	D	T	L	F	Y	P	M	V	S	G	R	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																			.	.	.											.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation																			.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	L	T	T	A	V	K	E	L	V	D	N	S	I	D	A	.	.	.	N	A	N	Q	I	E	I	I	F	K	.	.	.	.	.	.	.	.	.	.	.	D	Y	G	L	E	S	I	E	C	S	D	N	G	D	G	I	D	P	S	N	Y	E	F	L	A	L	K	H	Y	T	S	K	I	A	K	F	Q	D	V
Template Known Secondary structure			S															T	.	.	.	T		S								.	.	.	.	.	.	.	.	.	.	.	G	G	G	T	S								S					T	T	T	G	G	G	S	S									T	T	S	S
Template Predicted Secondary structure																			.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.												80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
							309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																														.
Query SS confidence		.	.	.	.	.																														.
Query Sequence		.	.	.	.	.	E	G	G	T	G	L	G	L	S	I	A	R	N	L	I	D	Q	H	S	G	K	I	E	F	T	S	W	P	G	.	H	T	E	F	S	V	Y	L
Query Conservation		.	.	.	.	.																														.
Alig confidence		.	.	.	.	.															.	.	.	.	.											.
Template Conservation																					.	.	.	.	.
Template Sequence		A	K	V	Q	T	L	G	F	R	G	E	A	L	S	S	L	C	G	I	.	.	.	.	.	A	K	L	S	V	I	T	T	T	S	P	P	K	A	D	K	L	E	Y
Template Known Secondary structure					T	T	S	S			S	S								S	.	.	.	.	.	S								S	S	T	T
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions