Job Description P0AFB5 Confidence 98.26% Date Thu Jan 5 11:25:49 GMT 2012 Rank 86 Aligned Residues 124 % Identity 13% Template c3gecA_ PDB info PDB header:circadian clock protein Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of a tandem pas domain fragment of2 drosophila period Resolution 4.00 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																					.	.														.	.	.	.	.
Query SS confidence																																																					.	.														.	.	.	.	.
Query Sequence		I	L	N	S	L	I	N	S	I	L	L	I	D	D	N	L	A	I	H	Y	A	N	P	A	A	Q	Q	L	L	A	Q	S	S	R	K	L	F	G	T	P	L	P	E	L	L	S	Y	F	S	L	N	.	.	I	E	L	M	Q	E	S	L	E	A	G	Q	G	.	.	.	.	.	F	T	D	N	E	V	T	L	V
Query Conservation																																																					.	.														.	.	.	.	.
Alig confidence																																																					.	.														.	.	.	.	.
Template Conservation
Template Sequence		L	S	Q	K	S	P	K	F	A	I	R	H	T	A	T	G	I	I	S	H	V	D	S	A	A	V	S	A	L	G	Y	L	P	Q	D	L	I	G	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G	Q	T	A	G	A	S	F	C	S	K	P	Y	R	F	L	I
Template Known Secondary structure				S	S	S		B							T	T	S	B						S	T	T	T	T	T	S				G	G	G	S	S	S	S	B					S																		G	G	G	S	S	S				B
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	G	R	S	H	I	L	S	V	T	A	Q	R	M	P	D	G	M	I	L	L	E	M	A	P	M	D	N	Q	R	R	L	S	Q	E	Q	L	Q	H	A	Q	Q	V	A	A	R	D	L	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	G	C	Y	V	L	L	E	T	E	W	T	S	F	V	N	P	W	S	R	K	L	E	F	V	V	G	H	H	R	V	F	Q	G	P	K	Q	C	N	V	F	E	A	A	P	T	C	K	L	K
Template Known Secondary structure		S	S	S															T	T	T	T										B						S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions