Job Description P0AFB5 Confidence 99.63% Date Thu Jan 5 11:25:49 GMT 2012 Rank 22 Aligned Residues 102 % Identity 26% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																																																						.	.	.	.
Query SS confidence																					.	.	.	.																																																						.	.	.	.
Query Sequence		I	E	Q	V	L	L	N	I	V	R	N	A	L	Q	A	L	G	P	E	.	.	.	.	G	G	E	I	I	L	R	T	R	T	A	F	Q	L	T	L	H	G	E	R	Y	R	L	A	A	R	I	D	V	E	D	N	G	P	G	I	P	P	H	L	Q	D	T	L	F	Y	P	M	V	S	G	R	E	.	.	.	.
Query Conservation																					.	.	.	.																																																						.	.	.	.
Alig confidence																					.	.	.	.											.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	.	.	.	.	.	.	.	.	.	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R
Template Known Secondary structure															T	T	T	T	T	T	T														.	.	.	.	.	.	.	.	.	T	T	T	T										S					G	G	G	S					T	S				S						S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.										.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
				310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.				.																		.									.	.
Query SS confidence		.	.				.																		.									.	.
Query Sequence		.	.	G	G	T	.	G	L	G	L	S	I	A	R	N	L	I	D	Q	H	S	G	K	.	I	E	F	T	S	W	P	G	.	.	H	T	E	F	S	V	Y	L	P	I	R
Query Conservation		.	.				.																		.									.	.
Alig confidence		.	.				.																		.									.	.
Template Conservation
Template Sequence		Q	T	R	G	M	Y	G	L	G	V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D
Template Known Secondary structure				S		S	S	S	S																								T	T		S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions