Job Description P0AFB5 Confidence 100.00% Date Thu Jan 5 11:25:49 GMT 2012 Rank 2 Aligned Residues 220 % Identity 17% Template c2q8fA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1 Resolution 2.03 Å

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		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		L	S	Q	E	Q	L	Q	H	A	Q	Q	V	A	A	R	D	L	V	R	G	L	A	H	E	I	K	N	P	L	G	G	L	R	G	A	A	Q	L	L	S	.	.	.	.	.	.	K	A	L	P	D	P	S	L	L	E	Y	T	K	V	I	I	E	Q	A	D	R	L	R	N	L	V	D	R	L	L	G	P	Q	L
Query Conservation																																										.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	F	K	D	K	S	A	E	D	A	K	A	I	Y	D	F	T	D	T	V	I	R	I	R	N	R	H	N	D	V	I	P	T	M	A	Q	G	V	I	E	Y	K	E	S	F	D	P	V	T	S	Q	N	V	Q	Y	F	L	D	R	F	Y	M	S	R	I	S	I	R	M	L	L	N	Q	H	S	L	L	F	G
Template Known Secondary structure		G	G	G	T	T	S		T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		191	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.										.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure						.	.																								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Query SS confidence						.	.																								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Query Sequence		P	G	T	R	.	.	V	T	E	S	I	H	K	V	A	E	R	V	V	T	L	V	S	M	E	L	P	D	N	.	.	.	.	.	.	.	.	.	V	R	L	I	R	D	Y	D	P	S	L	P	E	L	A	H	D	P	D	Q	I	E	Q	V	L	L	N	I	V	R	N	A	L	Q	A	L	.	.	.	.	.	.
Query Conservation						.	.																								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Alig confidence						.	.																								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	G	S	I	N	P	N	C	N	V	L	E	V	I	K	D	G	Y	E	N	A	R	R	L	C	D	L	Y	Y	I	N	S	P	E	L	E	L	E	E	L	N	A	K	S	P	G	Q	P	I	Q	V	V	Y	V	P	S	H	L	Y	H	M	V	F	E	L	F	K	N	A	M	R	A	T	M	E	H	H	A	N
Template Known Secondary structure			B	T	T	B																										S												S	S	S	T	T	S																														S	T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310													.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	E	G	G	E	I	I	L	R	T	R	T	A	F	Q	L	T	L	H	G	E	R	Y	R	L	A	A	R	I	D	V	E	D	N	G	P	G	I	P	P	H	L	Q	D	T	L	F	Y	P	M	V	S	G	R	E	G	.	.	.	.	.	.	.	.	.	.	.	.	G	T	G	L	G	L	S	I	A	R	N
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	V	Y	P	P	I	Q	V	H	V	T	.	.	.	.	.	.	.	.	.	.	L	G	N	E	D	L	T	V	K	M	S	D	R	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	T	A	P	R	P	R	V	E	T	S	R	A	V	P	L	A	G	F	G	Y	G	L	P	I	S	R	L
Template Known Secondary structure		T	T											.	.	.	.	.	.	.	.	.	.			S	S										S									G	G	G	G		T	T	T	T							S	S			S				S	S		T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.											.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		L	I	D	Q	H	S	G	K	I	E	F	T	S	W	P	G	.	H	T	E	F	S	V	Y	L	P
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		Y	A	Q	Y	F	Q	G	D	L	K	L	Y	S	L	E	G	Y	G	T	D	A	V	I	Y	I	K
Template Known Secondary structure						T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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