Job Description P0AFB5 Confidence 96.25% Date Thu Jan 5 11:25:49 GMT 2012 Rank 116 Aligned Residues 73 % Identity 21% Template c1zxnB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp Resolution 2.51 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.									300	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																																												.	.	.	.	.	.	.	.
Query SS confidence																					.	.																																												.	.	.	.	.	.	.	.
Query Sequence		I	E	Q	V	L	L	N	I	V	R	N	A	L	Q	A	L	G	P	E	.	.	G	G	E	I	I	L	R	T	R	T	A	F	Q	L	T	L	H	G	E	R	Y	R	L	A	A	R	I	D	V	E	D	N	G	P	G	I	P	P	H	L	Q	D	T	.	.	.	.	.	.	.	.	L	F	Y	P	M	V	S	G
Query Conservation																					.	.																																												.	.	.	.	.	.	.	.
Alig confidence																					.	.										.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	K	I	F	D	E	I	L	V	N	A	A	D	N	K	Q	R	D	P	K	M	S	C	I	R	V	T	I	D	.	.	.	.	.	.	.	.	.	.	.	.	P	E	N	N	L	I	S	I	W	N	N	G	K	G	I	P	V	V	E	H	K	V	E	K	M	Y	V	P	A	L	I	F	G	Q	L	L	T	S
Template Known Secondary structure																G	G	G	T		T	T										.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T								S	S					S			T	T	T	T										S	S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110													.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		308	.											310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	.	.	.	.	.	.	.	.	.	.	G	G	T	G	L	G	L	S	I	A	R	N	L
Query Conservation				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	Y	D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F
Template Known Secondary structure		S				G	G	G					S			S	S									T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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