Job Description P0AFB5 Confidence 98.70% Date Thu Jan 5 11:25:49 GMT 2012 Rank 76 Aligned Residues 132 % Identity 6% Template c1wa9A_ PDB info PDB header:circadian rhythm Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period Resolution 3.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		S	I	L	L	I	D	D	N	L	A	I	H	Y	A	N	P	A	A	Q	Q	L	L	A	Q	S	S	R	K	L	F	G	T	P	L	P	E	L	L	S	Y	F	S	L	N	.	.	I	E	L	M	Q	E	S	L	E	A	G	Q	G	F	T	D	N	E	V	T	L	V	I	D	G	R	S	H	I	L	S	V	T	A
Query Conservation																																														.	.
Alig confidence																																														.	.
Template Conservation
Template Sequence		C	C	V	I	S	M	H	D	G	I	V	L	Y	T	T	P	S	I	T	D	V	L	G	Y	P	R	D	M	W	L	G	R	S	F	I	D	F	V	H	L	K	D	R	A	T	F	A	S	Q	I	T	T	G	I	A	K	S	T	F	C	V	M	L	R	R	Y	R	G	L	K	S	G	G	F	G	V	I	G	R	P
Template Known Secondary structure							T	T	T		B						T	T									T	T	S	S	T	T	S	B	G	G	G	G	B		T	T	T								T	T	S														S				S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	M	P	D	G	M	I	L	L	E	M	A	P	M	D	N	Q	R	R	L	S	Q	E	Q	L	Q	H	A	Q	Q	V	A	A	R	D	L	V	R	G	L	A	H	E	I	K	N	P	L	G	G	L	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	Y	E	P	F	R	L	G	L	T	F	R	E	A	P	E	E	A	R	S	N	G	T	N	M	L	L	V	I	C	A	T	P	I	K	S	S	Y	K	V	P	D	E	I	L	S	Q	K	S	P	K	F	A
Template Known Secondary structure													B											S															S			S	T	T		B			T	T	S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions