 |
Job Description | P11663 | Confidence | 4.30% | Date | Thu Jan 5 11:32:48 GMT 2012 |
Rank | 37 | Aligned Residues | 73 |
% Identity | 8% | Template | d1joga_ |
SCOP info | Four-helical up-and-down bundle
| Nucleotidyltransferase substrate binding subunit/domain
| Family 1 bi-partite nucleotidyltransferase subunit
|
Resolution | 2.40 |
|
 |
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
. | . | 60 | . | . | |
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | L | Q | G | I | R | Q | F | L | P | S | L | F | V | D | N | D | E | E | I | V | E | Y | A | V | K | P | L | . |
. |
. |
. |
L | A | Q | S | G | . |
P | L | D | D | I | D | V | A | L | R | L | I | Y | A | L | G | K | M | D | K | W | L | Y | A | D | I | T | H | F | S | Q | F | W | H | Y | L | N | E | Q | D | E |
Query Conservation |   |
  |
|
|   |   |
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|
|
|
|   |   |   |
| . | . | . | . |
|   |   |   |
| . |
|
|
|
|
|
|   |
|
|
|
|
|   |   |
|
|
|
|   |   |   |   |   |   |
|
|   |   |   |
|
|
|
|
|   |
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |
|   |
|
|
|
|
|   | . |
|   |
|
|
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|   |
|   |   |   |
|
|
|   |
|   |   | . | . |   |
|
|   |
|
|   |   |
|
|   |
|
|
|
|
|
|
Template Sequence |   |
V | Q | D | T | L | I | A | G | A | I | Q | K | F | E | F | . |
V | Y | E | L | S | L | K | X | X | K | R | Q | L | Q | Q | D | A | I | N | T | D | D | I | G | A | Y | G | F | K | D | I | L | R | E | A | L | R | F | G | L | I | G | D | X | S | . |
. |
K | W | V | A | Y | R | D | X | R | N | I | T | S | H | T | Y | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |
|
|
| T | T | S |
|
|  |  |  |  |  |  |  |  |  |  | T | T | S |
| S |
|  |  | . | . |  |  |  |  |  |  |  |  |  | T | T | G | G | G | T | T | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
|
. | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
  |
  |   |
104 |
Predicted Secondary structure |   |
|
Query SS confidence |   |
|
Query Sequence |   |
T |
Query Conservation |   |
  |
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
Q |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
115 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|