Job Description P11663 Confidence 5.00% Date Thu Jan 5 11:32:48 GMT 2012 Rank 30 Aligned Residues 61 % Identity 30% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.													.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	D	D	V	L	E	Q	L	D	A	Q	D	N	L	F	S	F	M	K	T	A	H	T	I	L	L	Q	G	I	R	Q	F	L	P	S	L	F	V	D	N	D	E	E	I	V	E	Y	A	V	K	P	L	L	A	Q	S	G	P	.	.	.	.	.	.	.	.	.	.	.	.	L	D	D	I	D	V	A	L	R
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		A	E	D	D	L	T	H	K	L	V	D	.	.	.	.	.	.	.	I	I	R	I	N	N	R	L	K	Q	N	I	E	A	G	A	P	Q	L	I	I	E	D	L	W	D	L	L	Q	Y	H	V	T	T	Y	I	N	N	E	A	P	G	V	P	P	A	K	H	K	S	G	R	P	L	K	T	L	A	Q	R	L	K
Template Known Secondary structure		B											.	.	.	.	.	.	.														S				S																				T	T		T	T					B		T	T	S		B
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.								.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions