Job Description P03012 Confidence 99.84% Date Thu Jan 5 10:57:51 GMT 2012 Rank 12 Aligned Residues 120 % Identity 35% Template c3bvpB_ PDB info PDB header:recombination Chain: B: PDB Molecule:tp901-1 integrase; PDBTitle: crystal structure of the n-terminal catalytic domain of tp901-12 integrase Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																											.	.	.	.													.																					.	.
Query SS confidence																											.	.	.	.													.																					.	.
Query Sequence		R	L	F	G	Y	A	R	V	S	T	S	Q	Q	S	L	D	I	Q	V	R	A	L	K	D	A	.	.	.	.	G	V	K	A	N	R	I	F	T	D	K	A	.	S	G	S	S	S	D	R	K	G	L	D	L	L	R	M	K	V	E	E	G	.	.	D	V	I	L	V	K	K	L	D	R	L	G	R	D	T	A
Query Conservation																											.	.	.	.													.																					.	.
Alig confidence													.														.	.	.	.													.																					.	.
Template Conservation													.
Template Sequence		K	V	A	I	Y	T	R	V	S	T	G	.	F	S	I	D	E	Q	I	D	R	L	T	K	Y	A	E	A	M	G	W	Q	V	S	D	T	Y	T	D	A	G	F	S	G	A	K	L	E	R	P	A	M	Q	R	L	I	N	D	I	E	N	K	A	F	D	T	V	L	V	Y	K	L	D	R	L	S	R	S	V	R
Template Known Secondary structure													.																		T											T			S	S	S	S												G	G	G	T			S					S	S						S
Template Predicted Secondary structure													.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		D	M	I	Q	L	I	K	E	F	D	A	Q	G	.	V	S	I	R	F	I	D	D	G	I	S	T	D	G	E	M	G	K	M	V	V	T	I	L	S	A	V	A	Q	A	E	R	Q	R	I
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		D	T	L	Y	L	V	K	D	V	F	T	K	N	K	I	D	F	I	S	L	N	E	S	I	D	T	S	S	A	M	G	S	L	F	L	T	I	L	S	A	I	N	E	F	E	R	E	L	E
Template Known Secondary structure										T	T	G	G	G	T						T	T	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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