Job Description P31550 Confidence 99.94% Date Thu Jan 5 11:48:11 GMT 2012 Rank 64 Aligned Residues 256 % Identity 13% Template d1y3na1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	.	.	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	R	E	V	A	R	L	T	N	V	K	L	V	G	V	A	N	R	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	Q	L	P	D	I	V	G	G	D	N	L	K	D	K	F	I	R	Y	G	M	E	G	A	F	I	P
Template Known Secondary structure										T	T	T					T	T	S											S							S		S	S		S											T	S	S	S			S					T	T											T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		99	100	.																	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		S	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	.	.	.	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	K	L	I	D	Q	N	A	P	N	L	K	A	F	F	K	T	H	P	E	V	Q	R	A	I	T	A	P	D	G	N	I	Y	Y	L	P	Y	V	P	D	G	L	V	S	R	G	Y	F	I	R	Q	D	W	L	D	K	L	H	L	K	T	P	Q	T	V	D	E	L	Y	T	V	L	K	A	F	K	E	K	D
Template Known Secondary structure																												B		T	T	S		B										S															T	T						B														S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
									151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	.	.	.	.	V	T	K	G
Query Conservation		.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		P	N	G	N	G	K	A	D	E	I	P	F	I	N	R	D	P	E	E	V	F	R	L	V	N	F	W	G	A	R	S	T	G	S	N	T	W	M	D	F	Y	V	E	N	G	K	I	K	H	P	F	A	E	V	A	F	K	D	G	I	K	H	V	A	Q	W	Y	K	E	G	L	I	D	P	E	I	F	T	R	K
Template Known Secondary structure		T	T		S	S	S									S		T						G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T	S	B		T	T	T	T	T	S	G
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240												.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	.	.	.	.	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	.	.	.	.	.	.	.	.	.	.	.	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K
Query Conservation																															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	S	R	E	Q	T	F	G	N	N	I	G	G	M	T	H	D	W	F	A	S	T	A	L	F	N	D	A	L	S	K	N	I	P	G	F	K	L	V	P	M	A	P	P	I	N	S	K	G	Q	R	W	E	E	D	A	R	Q	I	P	R	P	D	G	W	A	I	T	A	T	N	K	N	P	V	E	T	I	K
Template Known Secondary structure		G	G						T	T	T	T																			S	T	T	T	S	T	T										B		T	T	S		B		B						S	S		S						B	T	T		S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	D	F	Y	F	G	P	K	G	R	E	L	S	N
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions