Return to main results Retrieve Phyre Job Id

Job DescriptionP31550
Confidence100.00%DateThu Jan 5 11:48:11 GMT 2012
Rank3Aligned Residues299
% Identity16%Templated1q35a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  KPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAK
Query Conservation    



    
          
   

   

 
              
         
                
 
  
Alig confidence 










....

























...



































Template Conservation 
 

 


   ....      
   

   

 
       ...   

         


                   
Template Sequence  ANEVNVYSYRQ. . . . PYLIEPMLKNFEKDTGIKVNIIFADG. . . LVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQK
Template Known Secondary structure 

SS
....GGGT




...
GGG



S
TT
B

Template Predicted Secondary structure 





....



...












Template SS confidence 















































































   1........10. ........20.........30....... ..40.........50.........60.........70...
 
   99100.. .......110.........120.........130.........140 .........150.........160.........170....
Predicted Secondary structure 


..

















..











Query SS confidence 



. .





































. .

































Query Sequence  SGVA. . ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQS. . LKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKV
Query Conservation      ..             
 

       
 

 
        ..                                  
Alig confidence 



..





































..

































Template Conservation                        
         



                                            
Template Sequence  IDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHY
Template Known Secondary structure 


S
GGGB
TTSS
TTTT
S

TT

GGGGGSGGGTT

S
TTS
Template Predicted Secondary structure 









































Template SS confidence 















































































   75....80.........90.........100.........110.........120.........130.........140.........150....
 
   175....180.........190.. .......200.........210.........220........ .230.........240.......
Predicted Secondary structure 






.












......






Query SS confidence 

















.



































. . . . . .


















Query Sequence  YGDDAPQAWQKLAKKTVT. VTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKK. . . . . . DNYAAANFSEGHYLQVEVA
Query Conservation             
      .              
                     ......       
  
        
Alig confidence 

















.



































......


















Template Conservation 
                                
                                     
        
Template Sequence  GIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGV
Template Known Secondary structure  TBSS


S
TS
STSTTTT


STT
B
Template Predicted Secondary structure 




































Template SS confidence 















































































   155....160.........170.........180.........190.........200.........210.........220.........230....
 
   248.250.........260.........270.........280.........290.........300.........310.........320....
Predicted Secondary structure 




























Query SS confidence 












































































Query Sequence  ARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAAQRQAWISEWQRA
Query Conservation   
   
     
  

 

 
 
 
          
                                     
   
Alig confidence 












































































Template Conservation   
   
   
 
  

 

 
 
 
   
   
  
    
                                    
Template Sequence  VIAKHSPNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEV
Template Known Secondary structure  BTT
TTS

SSTT



T



B



TT
Template Predicted Secondary structure 
































Template SS confidence 












































































   235....240.........250.........260.........270.........280.........290.........300.........310.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions