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Job DescriptionP31550
Confidence48.62%DateThu Jan 5 11:48:11 GMT 2012
Rank119Aligned Residues184
% Identity14%Templatec3uifA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VKKAFEADCNCELKLVAL. . . EDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDT
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Template Sequence  FPEELRKQ. GIKVEWVPAAXASVGPVINEGF. . . . ASGKIDFGIYGDLPPIILNASKPTVQLV. . . . . . . . . . . . . . . . .
Template Known Secondary structure  T.T
TT
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   57..60.... .....70.........80...... ...90.........100.........110....
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  FVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKG
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Template Sequence  APWGTTSNSYLVVPK. . . NSTAKSIKDL. . . . . KGKKIALHRGRPWELAFSNLLQSEGLTFK. . . . . . . . . . DFKIVNVN
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T...T



SGGGG.....TTS
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   115....120......... 130......... 140.........150.........160........ .170......
 
   197..200.........210.........220.........230.........240.........250.. .......260....
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Query Sequence  WSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA. . SKQPELAQKFLQ
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Template Sequence  PQVGAAALASGTVDGFFSLFDSYI. LEDRGVGKIIWSTKTAPVDWKLXGGVWARNDFVKQNPEITQAIVT
Template Known Secondary structure  TSSSSTT.TTSGGGS
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   177..180.........190.........200 .........210.........220.........230.........240.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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