Job Description P31550 Confidence 97.13% Date Thu Jan 5 11:48:11 GMT 2012 Rank 81 Aligned Residues 194 % Identity 19% Template c3tqwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii Resolution 2.00 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D
Query Conservation
Alig confidence																																		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	X	E	V	A	K	Q	V	A	L	N	R	Y	G	L	H	V	N	I	I	T	F	S	D	Y	N	T	P	N	E	A	L	.	.	.	.	A	D	G	S	V	D	A	N	X	F	Q	H	L	P	Y	L	K	A	Q	I	E	X	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																								S		T	T	S						.	.	.	.		T	T	S		S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence		.																															.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Template Conservation		.																															.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	G	Y	K	I	V	S	I	G	K	T	F	V	Y	P	X	G	L	Y	S	K	K	I	T	A	L	T	Q	L	K	T	.	.	.	.	G	A	K	I	A	V	P	S	D	P	S	N	E	A	R	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	E	K	A	Q	L	I	Q	L	K
Template Known Secondary structure		.																				S	S		S	S	G	G	G			T	.	.	.	.	T								S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S
Template Predicted Secondary structure		.																															.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																	.	.	.	120	.	.	.	.	.	.	.
																	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation																																												.	.	.
Template Sequence		T	H	I	N	A	T	P	X	D	I	A	S	N	P	K	K	L	K	I	V	E	L	D	A	A	Q	L	S	R	S	L	G	D	V	D	L	A	A	I	N	T	N	.	.	.	Y	A	I	P	A	G	L	S	P	S	R	D	A	L	L	T	E	G	P	N	S	P	Y	A	N	V	V	A	V	R	E	D	D	K	N
Template Known Secondary structure								G	G	G					T	T									G	G	G	G	G	G		T	T	T		S								.	.	.			G	G	G	T			T	T	T	T		S					S	S	S	S									G	G	G	T	T
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	R	L	K	Q	L	V	S	A	L	H	S	P	A	V	L	S	A	A	K	K	I
Template Known Secondary structure													T	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions