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Job DescriptionP31550
Confidence93.67%DateThu Jan 5 11:48:11 GMT 2012
Rank92Aligned Residues218
% Identity12%Templatec3tmgA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAA. . . SKTGLF
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Template Sequence  KSVKIGYVN. . WGGETAATNVLKVVFEKMGYNAEIFSV. TTSIMYQYLA. . . . SGKIDGTVSSWVPTADKFYYEKLKTKF
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TT
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Query Sequence  AKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG
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Template Sequence  VDL. . . . . . . . . . . . . . . . . GANYEGTIQGFVVPSYV. . . PISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALNYYG
Template Known Secondary structure  .................TTS...


BGGGGTT
GGGGTT

STT
TT
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   99100. ........110........ .120.........130.........140.........150........
 
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Query Sequence  DDAPQAWQKLAKKTVTVTKGW. . . . SEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA
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Template Sequence  LSK. . . . . . . . . EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFSRY. . . . . DIKFLDDPDLIMGGIESVHTLVR
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   159160. ........170.........180.........190.........200. ........210.........220....
 
   253 ......260.........270........
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Query Sequence  S. . . . KQPELAQKFLQFMVSPAFQNAIPTG
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Template Sequence  LGLENDDFDAYYVFDHFYWSDDLILPLMDK
Template Known Secondary structure  TT




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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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