Job Description P31550 Confidence 89.16% Date Thu Jan 5 11:48:11 GMT 2012 Rank 99 Aligned Residues 239 % Identity 12% Template c3r6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis Resolution 1.61 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	.	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K
Query Conservation																																							.
Alig confidence							.																																.												.	.	.	.
Template Conservation							.																																												.	.	.	.
Template Sequence		Q	T	I	K	I	.	G	A	Q	S	M	S	E	S	E	I	I	A	S	M	L	G	Q	L	I	E	H	H	T	D	L	K	T	T	T	I	K	N	L	G	S	N	A	V	Q	Q	Q	A	L	.	.	.	.	M	N	G	E	I	D	I	A	A	T	R	Y	T	G	D	A	L	T	G	T	L	R	M	E	P	E	K
Template Known Secondary structure							.				S	S																		S	S											S									.	.	.	.		T	T	S		S														T	T
Template Predicted Secondary structure							.																																												.	.	.	.
Template SS confidence
		12	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	.	.	.	.	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		D	P	D	K	A	L	A	L	T	Q	R	E	F	K	K	R	Y	D	L	K	W	Y	D	S	Y	G	F	D	N	T	Y	A	F	T	V	S	K	E	L	A	D	Q	Y	H	L	E	T	V	S	D	V	K	K	W	A	P	Q	L	K	L	G	V	D	N	Y	W	M	K	L	K	G	N	G	Y	Q	D	F	T	K	T
Template Known Secondary structure		S																									S		B																T			B	S	G	G	G	G	G	G	G	G	G							T	T	G	G	G		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	.
Query Conservation																																																																																	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.																									.
Template Conservation						.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Sequence		Y	G	M	T	.	.	.	.	.	.	.	.	.	.	F	G	G	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	S	G	K	M	D	I	V	L	A	Y	S	T	D	G	R	I	K	S	Y	.	.	.	.	.	G	L	K	M	L	K	D	D	K	Q	F	F	P	P	Y	D	C	S	P	V	V	P	E	K	V
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.		S							G	G	G								T	S		S						T	T							T	.	.	.	.	.	T					B		T	T			S				B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template SS confidence
		167	.	.	170											.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
				254	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.													.	.
Query SS confidence		.	.													.	.
Query Sequence		.	.	K	Q	P	E	L	A	Q	K	F	L	Q	F	.	.	M	V	S	P	A	F	Q	N	A	I	P	T	G
Query Conservation		.	.													.	.
Alig confidence		.	.													.	.
Template Conservation
Template Sequence		L	K	E	H	P	E	L	E	G	I	I	K	K	M	L	G	K	I	D	T	A	T	M	Q	E	L	N	Y	E
Template Known Secondary structure					S	T	T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions