Job Description P31550 Confidence 20.14% Date Thu Jan 5 11:48:11 GMT 2012 Rank 137 Aligned Residues 199 % Identity 11% Template c3n6uA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate Resolution 1.87 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K
Query Conservation																															.
Alig confidence													.	.																	.																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																																			.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	I	T	F	A	A	S	P	A	I	.	.	A	L	A	A	L	P	L	A	L	A	S	F	A	R	E	F	P	D	V	T	V	N	V	R	D	G	M	Y	P	A	V	S	P	Q	.	.	.	.	.	L	R	D	G	T	L	D	F	A	L	T	A	A	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													.	.			T														T	T										T	T	T	T				.	.	.	.	.			T	T	S		S								G	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.																																			.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V	Y	G	D	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	H	D	I	D	T	D	L	E	A	Q	P	L	Y	V	S	D	V	V	I	V	G	Q	R	Q	H	P	M	A	N	A	T	R	L	A	E	L	Q	E	C	R	W	A	F	S	S	A	P	R	G	P	G	A	I	I	R	N	A	F	A	R	Y	G	L	P	E	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	G	G	S		T	T																	T	T		T	T	T	T			S	G	G	G	G	T	T	S								T	T	S	T	T										T	T				.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Template SS confidence
												152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	P	K	L	G	L	V	C	E	S	F	L	A	L	P	G	V	V	A	H	S	D	L	L	T	T	M	P	.	.	.	.	R	T	L	Y	E	R	N	A	F	K	D	Q	L	C	S	I	P	L	Q	D	A	L	P	N	P	T	I	Y	V	L	R	R	H	D	L	P	V	T	P	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.										T	T	T							T	S	S		B					.	.	.	.						S	S	T	T	G	G	G								S													T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																												.	.	.	.
Template SS confidence
											217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		259	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	K	F	L	Q	F	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	G	L	I	R	W	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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