Return to main results Retrieve Phyre Job Id

Job DescriptionP31550
Confidence100.00%DateThu Jan 5 11:48:11 GMT 2012
Rank24Aligned Residues274
% Identity16%Templatec3mp6A_
PDB info PDB header:histone binding proteinChain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4
Resolution1.48 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  KPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAK
Query Conservation    



    
          
   

   

 
              
         
                
 
  
Alig confidence 










..



























...



































Template Conservation   
 
 

   
..     
 
    


 




 
   

...   

  
 


  



          
  
 
 
Template Sequence  EGKLVIWINGD. . KGYNGLAEVGKKFEKDTGIKVTVEHPDK. . . LEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAE
Template Known Secondary structure  TTS

TT..S





TT...TT
S
SGGGTT
B

Template Predicted Secondary structure 



..






...











Template SS confidence 















































































   742.......750.. .......760.........770.........780 .........790.........800.........810......
 
   99100. ........110.........120.........130.........140......... 150.........160......
Predicted Secondary structure 


........


















....








Query SS confidence 


. . . . . . . .















































. . . .
















Query Sequence  SGV. . . . . . . . AADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQ. . . . NWRVIYQDPRTSTPGLG
Query Conservation     ........              
 

       
 

 
                 ....                 
Alig confidence 


........















































....
















Template Conservation 
       
      
   
 







       
 







 
 




   




  
  
            
Template Sequence  ITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTW
Template Known Secondary structure 



TB
TTT
S

TTT
SS

SBGGGTTT



SSSGGGT
Template Predicted Secondary structure 




















Template SS confidence 















































































   817..820.........830.........840.........850.........860.........870.........880.........890......
 
   167..170 .........180.........190.... .....200.........210.........220.....
Predicted Secondary structure  ....................









.








Query SS confidence 



. . . . . . . . . . . . . . . . . . . .























.






























Query Sequence  LLLW. . . . . . . . . . . . . . . . . . . . MQKVYGDDAPQAWQKLAKKTVTVT. KGWSEAYGLFLKGESDLVLSYTTSPAYHILE
Query Conservation      ....................               
        .            
                  
Alig confidence 



....................























.






























Template Conservation    
   

          
     



  




   

   
              
  

 

 
 
 
        
Template Sequence  PLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTS
Template Known Secondary structure  TT
TTTTSTTSS
TT

TTS
GGGS
Template Predicted Secondary structure 
































Template SS confidence 















































































   897..900.........910.........920.........930.........940.........950.........960.........970......
 
   226...230......... 240.........250.........260.... .....270.........280.........290.......
Predicted Secondary structure 








....





.














Query SS confidence 













. . . .
























.
































Query Sequence  EKKDNYAAANFSEG. . . . HYLQVEVAARTAASKQPELAQKFLQ. FMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLT
Query Conservation            
  
....         
   
     
  

 .

 
 
 
          
              
Alig confidence 













....
























.
































Template Conservation      


 

   
       
     
 
 






  


  
 
 
            
            

Template Sequence  KVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDP
Template Known Secondary structure  S




BBTTB



BTT
TTTTSSS

SSBTT
Template Predicted Secondary structure 





































Template SS confidence 












































































   977..980.........990.........1000.........1010.........1020.........1030.........1040.........1050...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions