Phyre 2 alignment of P31550 with c3i3vC

Job Description P31550
Confidence 99.95% Date Thu Jan 5 11:48:11 GMT 2012

Rank 60 Aligned Residues 271

% Identity 14% Template c3i3vC_

PDB info PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																				.														.
Query SS confidence																				.														.
Query Sequence	F	A	K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	.	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G
Query Conservation																				.														.
Alig confidence																				.														.													.
Template Conservation																																															.
Template Sequence	S	D	P	D	T	L	V	V	H	T	Q	L	G	T	T	A	P	G	S	P	T	Y	L	A	A	V	D	R	F	R	E	E	N	P	G	V	K	I	K	N	L	V	N	G	D	D	.	L	A	Q	V	Y	E	T	S	R	L	A	R	K	E	A	D	V	V	X	V	N	L	Y	D	K	T	L	A	W	T	D	V	G
Template Known Secondary structure		S	T	T							S		S	S	S	S	T	T																T	T									S	T	T	.											T	T				S							S	T	T	G	G	G					T
Template Predicted Secondary structure																																															.
Template SS confidence
	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

	95	.	.	.	.	100	.													.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.										150	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Query Sequence	L	F	A	K	S	G	V	.	.	.	.	.	.	.	.	.	.	.	.	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	.	.	.	.	.	.	.	.	.	N	W	R	V
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	T	V	D	V	K	P	Y	L	D	D	W	G	L	R	G	R	V	L	P	A	A	L	A	D	W	T	D	D	E	G	R	V	R	A	F	P	Y	F	A	T	N	W	P	V	A	Y	N	R	A	L	L	D	R	A	G	V	D	A	I	P	T	T	G	D	Q	L	I	A	A	A	R	K	L	R	A	K	G	I	A
Template Known Secondary structure	S	S									G	G	G		T	T	S	B								T	B		T	T	S		B		S	B																				T			S				B														T	T
Template Predicted Secondary structure
Template SS confidence
	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	M	Q	K	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	.	.	.	.	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence	P	V	T	V	G	G	N	D	W	T	G	Q	K	L	L	A	Q	I	I	Q	T	F	L	S	Q	D	E	A	R	H	V	Y	S	T	G	D	F	G	V	R	G	A	R	L	G	I	E	Y	F	A	H	L	R	D	A	G	V	F	A	D	K	A	Q	G	L	T	S	D	S	X	T	T	Q	F	N	T	E	E	A	A
Template Known Secondary structure						T	T	S												G	G	G													T		T	T	S																T	T		B		T	T	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	211	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.										240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																		.	.	.	.	.	.	.	.	.																.
Query SS confidence													.																		.	.	.	.	.	.	.	.	.																.
Query Sequence	L	V	L	S	Y	T	T	S	P	A	Y	H	.	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	.	.	.	.	.	.	.	.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	.	Q	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N
Query Conservation													.																		.	.	.	.	.	.	.	.	.																.
Alig confidence													.																		.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence	V	Q	S	A	X	S	S	A	L	A	K	V	P	E	K	V	A	G	H	T	E	V	G	G	W	P	L	A	D	G	A	A	H	D	G	P	T	V	I	R	A	Y	T	L	I	G	F	W	I	S	P	N	G	V	R	K	I	E	Q	V	E	K	F	L	R	F	X	Y	R	P	D	V	V	A	R	F	V	T	E	S
Template Known Secondary structure										T	T	S							T						B		B		T	T		S	S	S	S									S	S											T												T	S
Template Predicted Secondary structure
Template SS confidence
	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	M	Y	P	V	A	N	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	R	D	X	A	L	R	T	D
Template Known Secondary structure					S	B			S
Template Predicted Secondary structure
Template SS confidence
	356	.	.	.	360	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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