Job Description P31550 Confidence 74.71% Date Thu Jan 5 11:48:11 GMT 2012 Rank 108 Aligned Residues 197 % Identity 12% Template c3g41A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae Resolution 2.10 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.			.	.	.	.
Query SS confidence																.	.	.	.	.			.	.	.	.
Query Sequence		K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	.	.	.	.	.	D	W	.	.	.	.	G	P	G	P	V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A
Query Conservation																.	.	.	.	.			.	.	.	.
Alig confidence																.	.	.	.	.			.	.	.	.																																.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		N	R	I	W	I	V	G	T	N	A	T	Y	P	P	F	E	Y	V	D	A	Q	G	E	V	V	G	F	D	I	D	L	A	K	A	I	S	E	K	L	G	K	Q	L	E	V	R	E	F	A	F	D	A	L	I	L	N	.	.	.	.	.	L	K	K	H	R	I	D	A	I	L	A	G	M	S	I	T	P	S	R
Template Known Secondary structure											S		B	T	T	T	B				T	T	S				S														T										G	G	G					.	.	.	.	.			T	T	S	S	S				S			B
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	K	T	G	L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	I	A	L	L	P	Y	Y	G	D	E	V	Q	E	L	M	V	V	S	K	R	S	L	E	T	P	V	L	P	L	T	Q	Y	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S										B									T	T			S		S			G	G	G	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84																						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	M	Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q	V	E	V	A	A	R
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	V	A	V	Q	T	G	T	Y	Q	E	H	Y	L	L	S	Q	P	G	I	C	V	R	S	F	D	S	T	L	E	V	I	M	E	V	R	Y	G	K	S	P	V	A	V	L	E	P	S	V	G	R	V	V	L	K	D	F	P	N	L	V	A	T	R	L	E	L	P	P	E	C	W	V	L	G	C	G	L	G	V
Template Known Secondary structure		.					T	T	S								T	S	T	T							S											T	T	S	S	S													G	G	G		T	T										G	G	G		B
Template Predicted Secondary structure		.
Template SS confidence
			121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	M
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		A	K	D	.	.	R	P	E	E	I	Q	T	I	Q	Q	A	I
Template Known Secondary structure			T	T	.	.
Template Predicted Secondary structure					.	.
Template SS confidence
		200	.	.			.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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