Return to main results Retrieve Phyre Job Id

Job DescriptionP31550
Confidence99.89%DateThu Jan 5 11:48:11 GMT 2012
Rank70Aligned Residues275
% Identity13%Templatec3cg3A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40........ .50.........60.........70.........80.........90..
Predicted Secondary structure 








....













Query SS confidence 































. . . .











































Query Sequence  FAKPVLTVYTYDSFAADWGPGPVVKKAFEADC. . . . NCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASK
Query Conservation   
  



    
          
   

   ....

 
              
         
               
Alig confidence 












...















....


























.















Template Conservation 
    


   

...       
   
       


 
                       .

              
Template Sequence  SREARLIIFHAGS. . . LSIPLSQVEEKFTKYAQEKLGVKVTFQDEASGSVKAVRKVTDLKKRA. DIVAVADYTLIPQLMI
Template Known Secondary structure 

GG...G


TS



.SSSTTTT
Template Predicted Secondary structure 





...















.


Template SS confidence 















































































   25....30....... ..40.........50.........60.........70.........80.... .....90.........100
 
   93......100. ........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 








...........



























Query SS confidence 








. . . . . . . . . . .



























































Query Sequence  TGLFAKSGV. . . . . . . . . . . AADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTS
Query Conservation   
 
     ...........              
 

       
 

 
                             
Alig confidence 








...........















































...








Template Conservation   
 
                                                                ...         
Template Sequence  PNYTDFYVLFATNEIVIAFTNKSKYADEMLKNPDKWYEILSRPDVSFGFSDPNQDPCGYRSVMVMKLA. . . ELYYGRPIF
Template Known Secondary structure  TTT
S


TTSTT
GGGTT
TT


TTT
...
S
Template Predicted Secondary structure 














































...








Template SS confidence 















































































   101........110.........120.........130.........140.........150.........160........ .170.......
 
   162.......170.........180.........190.........200.........210.........220 .
Predicted Secondary structure 


















....................
Query SS confidence 


























































. . . . . . . . . . . . . . . . . . . .
Query Sequence  TPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPA. . . . . . . . . . . . . . . . . . . . Y
Query Conservation                          
                    
             .................... 
Alig confidence 


























































....................
Template Conservation                                               
                                  
Template Sequence  KELVEKTTNIYSNGTRIYAPKEIIIKDKRVIMRPKETDLVGLVESGSLDYIFIYKSVAKQHHLSYITLPDDINLGDFNKA
Template Known Secondary structure  TTTTBS
TT
SS

BSSTTSSTTTSS
TT


TTTSS

GGG
Template Predicted Secondary structure 




































Template SS confidence 















































































   178.180.........190.........200.........210.........220.........230.........240.........250.......
 
   222.......230.........240.........250.........260.........270.........280......... 290.......
Predicted Secondary structure 



























....

Query SS confidence 



































































. . . .







Query Sequence  HILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTL. . . . PAGFEKLT
Query Conservation                
  
         
   
     
  

 

 
 
 
          
      ....        
Alig confidence 
























































.









....







Template Conservation                             
   
 
 


  

 

 
 
 
      .
  
          

  
   
Template Sequence  DFYGRVSITLGSTGKTIKAKPIVYGITVLKNAPNRELAIEFLRFLLGNEGRKIFEDN. YQEFLSPPVAFGNVPPEIRRLV
Template Known Secondary structure  TT
TTT






TT
TTST.T

S

GGGTTTS
Template Predicted Secondary structure 
























.















Template SS confidence 















































































   258.260.........270.........280.........290.........300.........310.... .....320.........330......
 
   298.
Predicted Secondary structure 

Query SS confidence 

Query Sequence  KP
Query Conservation    
Alig confidence 

Template Conservation    
Template Sequence  EV
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 

   337.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions