Job Description P31550 Confidence 99.88% Date Thu Jan 5 11:48:11 GMT 2012 Rank 74 Aligned Residues 258 % Identity 13% Template c3cg1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate Resolution 1.60 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	.	.	.	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G
Query Conservation																																.	.	.	.
Alig confidence													.	.	.																	.	.	.	.																												.
Template Conservation													.	.	.																																																.
Template Sequence		E	V	T	L	I	V	F	H	A	G	S	.	.	.	L	S	V	P	F	Q	E	V	E	K	E	F	S	E	Y	A	E	R	N	L	G	I	K	V	S	F	Q	D	E	A	S	G	S	V	M	A	V	R	K	V	T	D	L	G	R	K	A	.	D	V	I	G	V	A	D	Y	T	L	I	P	Q	L	L	I	P	N
Template Known Secondary structure											G	G	.	.	.	G																				S																					T	S					.	S					S	S	T	T						T	T	T	T
Template Predicted Secondary structure													.	.	.																																																.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	.	.	.	.	.	.	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L
Query Conservation																							.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	D	F	Y	V	L	F	A	T	N	E	I	V	I	A	F	T	D	K	S	R	Y	V	E	E	M	K	S	N	P	D	K	W	Y	E	I	L	A	R	E	D	V	R	F	G	F	S	D	P	N	Q	D	P	C	G	Y	R	S	L	M	V	I	K	L	A	D	L	Y	Y	G	K	E	I	F	K	E	L	I	E
Template Known Secondary structure		T		S																T	T	S	T	T								G	G	G						T	S	T	T								T	T	T																			T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.																					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	W	M	Q	K	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																																																					.	.
Template Sequence		E	N	T	N	I	Y	S	N	G	T	Q	I	Y	A	P	K	E	I	T	V	N	P	G	K	I	V	I	R	P	K	E	T	D	L	L	G	L	V	E	S	G	S	I	D	Y	I	F	I	Y	K	S	.	.	V	A	K	Q	H	N	L	S	Y	I	T	L	P	S	E	I	N	L	G	D	F	S	K	E	K	F	Y
Template Known Secondary structure		T	T	B	S					T	T						S	S			B		T	T	T					S	S	G	G	G	G							T	S	S	S								.	.					T	T								T	T	T	S	S			G	G	G
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		D	N	Y	A	A	A	N	F	S	E	G	.	.	.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence		G	Q	I	S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	I	V	Y	G	V	T	V	L	K	D	A	P	N	R	E	V	A	I	E	F	L	R	Y	L	L	S	E	N	G	K	R	I	F	E	K	N	H	Q	D	F
Template Known Secondary structure		T	T						T	T	T																	T	T		T	T													S										T	T			B
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions