Job Description P31550 Confidence 99.88% Date Thu Jan 5 11:48:11 GMT 2012 Rank 72 Aligned Residues 257 % Identity 12% Template c3cfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	D	C	.	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	M	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A
Query Conservation																																.
Alig confidence													.	.	.																	.										.																	.	.
Template Conservation													.	.	.																											.																	.	.
Template Sequence		K	I	V	L	K	I	F	H	A	G	S	.	.	.	L	S	V	P	F	E	E	Y	E	K	M	F	E	K	E	H	P	N	V	D	V	E	R	E	P	A	.	G	S	V	A	C	V	R	K	I	I	D	L	G	K	K	A	.	.	D	I	L	A	S	A	D	Y	S	L	I	P	Q	M	M	M	P	K	Y	A	D
Template Known Secondary structure											G	G	.	.	.	G																T	T									.											T	S					.	.	S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure													.	.	.																											.																	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		98	.	100	.												.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	S	G	V	.	.	.	.	.	.	.	.	.	.	.	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G
Query Conservation						.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	Y	V	M	F	A	R	N	E	I	V	L	A	Y	T	D	K	S	K	Y	K	D	E	I	N	S	T	N	W	Y	K	I	L	Q	R	P	D	V	K	I	G	F	S	N	P	N	D	D	P	C	G	Y	R	T	Q	M	V	L	Q	L	A	E	L	Y	Y	K	D	P	T	I	Y	D	N	L	V	L	K	H	S	N
Template Known Secondary structure																	T	T	S	T	T	T	T	T			T	T	T					T	T	S	T	T								T	T	T																			T		T	T						T	G	G	G	B	S
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.																	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	L	W	M	Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	E	E	K	K	D	N
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	V	E	E	N	N	G	T	Y	L	I	L	V	P	K	E	L	D	V	D	T	N	K	L	F	V	R	S	K	E	T	D	L	L	A	P	L	E	A	G	A	F	D	Y	L	F	I	Y	K	S	V	A	N	Q	H	H	L	K	Y	I	E	L	P	K	E	I	N	L	G	Y	Y	E	Y	A	D	T	Y	K	K
Template Known Secondary structure								T	T								S	S			B		T	T	T					S	S	G	G	G	G						T	T	S	S	S												T	T								T	T	T	S	S			G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		231	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		Y	A	A	A	N	F	S	E	G	.	.	.	.	H	Y	L	Q	V	E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	M	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	M	Y	P	V
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.																																.	.	.
Template Conservation																																														.	.	.
Template Sequence		V	A	L	K	I	I	A	K	N	K	T	I	N	A	K	P	I	V	Y	G	M	T	V	P	T	N	A	P	H	K	K	E	A	I	E	F	V	K	F	V	L	G	H	P	.	.	.	E	V	L	E	N	N	G	Q	P	A	I
Template Known Secondary structure							G	G	G	T																T	T		T	T															T	.	.	.					T	T	T			B
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions